JAL-2418 known defect for eggnog tree import (JAL-2590)

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 5c8da91..86a1100 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -71,7 +71,7 @@ li:before {
       <td width="60" nowrap>
         <div align="center">
           <strong><a name="Jalview.2.10.2">2.10.2</a><br />
-            <em>30/5/2017</em></strong>
+            <em>8/8/2017</em></strong>
         </div>
       </td>
       <td><div align="left">
@@ -91,7 +91,8 @@ li:before {
               extension when importing structure files without embedded
               names or PDB accessions
             </li>
-            <li><!-- JAL-2547 -->Amend sequence features dialog box can be opened by double clicking gaps within sequence feature extent</li>
+          <li><!-- JAL-2547 -->Amend sequence features dialog box can be opened by double clicking gaps within sequence feature extent</li>
+         <li><!-- JAL-2631 -->Graduated feature colour style example included in the example feature file</li>
           </ul>
           <em>Application</em>
           <ul>
@@ -127,7 +128,7 @@ li:before {
           <ul>
             <li>
               <!-- JAL-2398, -->Fixed incorrect value in BLOSUM 62 score
-              matrix - C->R should be '3'<br />Old matrix restored with
+              matrix - C->R should be '-3'<br />Old matrix restored with
               this one-line groovy script:<br />jalview.analysis.scoremodels.ScoreModels.instance.BLOSUM62.@matrix[4][1]=3
             </li>
             <li>
@@ -136,7 +137,7 @@ li:before {
               earlier versions of Jalview, gaps matching gaps were
               penalised, and gaps matching non-gaps penalised even more.
               In the PCA calculation, gaps were actually treated as
-              non-gaps - so different costs were applied, which mean't
+              non-gaps - so different costs were applied, which meant
               Jalview's PCAs were different to those produced by
               SeqSpace.<br />Jalview now treats gaps in the same way as
               SeqSpace (ie it scores them as 0). To restore pre-2.10.2
@@ -163,7 +164,13 @@ li:before {
           <li><!-- JAL-2385 -->Conservation shading or PID threshold lost when base colourscheme changed if slider not visible</li>
           <li><!-- JAL-2547 -->Sequence features shown in tooltip for gaps before start of features</li>
           <li><!-- JAL-2576 -->Very large alignments take a long time to load</li>
-          <li><!-- JAL-2590 -->Cannot load Newick trees from eggnog ortholog database</li>
+           <li><!-- JAL-2623 -->Graduated feature colour threshold not restored to UI when feature colour is edited</li>
+           <li><!-- JAL-2624 -->Feature colour thresholds not respected when rendered on overview and structures when opacity at 100%</li>
+           <li><!-- JAL-2630 -->Structure and alignment overview update as graduate feature colour settings are modified via the dialog box</li>
+           <li><!-- JAL-147 -->Vertical scrollbar jumps one page-width at a time when scrolling vertically in wrapped mode.</li>
+           <li><!-- JAL-2034 -->Overview window doesn't always update when a group defined on the alignment is resized</li>
+           <li><!-- JAL-2605 -->Mouseovers on left/right scale region in wrapped view result in positional status updates</li>
+           <li><!-- JAL-2563 -->Status bar shows position for ambiguous amino acid and nucleotide symbols</li>
           </ul>
           <em>Application</em>
           <ul>
@@ -198,6 +205,7 @@ li:before {
           <ul>
           <li><!--  JAL-2566 -->Protein/CDS view scrolling not always in phase after a sequence motif find operation</li>
           <li><!-- JAL-2550 -->Importing annotation file with rows containing just upper and lower case letters are interpreted as WUSS rna secondary structure symbols</li>  
+            <li><!-- JAL-2590 -->Cannot load Newick trees from eggnog ortholog database</li>
           </ul>
           
           </div>