JAL-2236 release notes and additional docs

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index c34885c..9339b33 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -52,19 +52,21 @@
       </td>
       <td><em>General</em>
         <ul>
-            <li><!-- JAL-2164,JAL-1919,-->Jmol now primary parser for importing structure data to Jalview. Enables mmCIF and better PDB parsing.</li>
+            <li><!-- JAL-2164,JAL-1919,JAL-2148 -->Jmol now primary parser for importing structure data to Jalview. Enables mmCIF and better PDB parsing.</li>
             <li><!-- JAL-192 --->Alignment ruler shows positions relative to reference sequence</li>
             <li><!-- JAL-2202 -->Position/residue shown in status bar when mousing over sequence associated annotation</li>
             <li><!-- JAL-2171 -->Default RNA SS symbol to 'matching bracket' for manual entry</li>
             <li><!-- JAL-2214 -->RNA Structure consensus indicates wc-only '()', canonical '[]' and invalid '{}' base pair populations for each column</li>
             <li><!-- JAL-2092 -->Feature settings popup menu options for showing or hiding columns containing a feature</li>
             <li><!-- JAL-1557 -->Edit selected group by double clicking on group and sequence associated annotation labels</li>
+            <li><!-- JAL-2236 -->Sequence name added to annotation label in select/hide columns by annotation and colour by annotation dialogs</li>
         </ul> <em>Application</em>
         <ul>
             <li><!-- JAL---></li>
             <li><!-- JAL---></li>
             <li><!-- JAL---></li>
             <li><!-- JAL---></li>
+            <li><!--  JAL-1957, JAL-1479 JAL-1491 -->UniProt - PDB protein structure mappings with the EMBL-EBI PDBe SIFTS database</li>          
             <li><!-- JAL-2079 -->Updated download sites used for Rfam and Pfam sources to xfam.org</li>
             <li><!-- JAL-2084 -->Disabled Rfam(Full) in the sequence fetcher</li>
             <li><!-- JAL-2123 -->Show residue labels in Chimera when mousing over sequences in Jalview</li>
@@ -79,7 +81,7 @@
             <li><!-- JAL-2183 -->Double click on an entry in Jalview's database chooser opens a sequence fetcher</li>
             <li><!-- JAL-1563 -->Free-text search client for UniProt using the UniProt REST API</li>
             <li><!-- JAL-2168 -->-nonews command line parameter to prevent the news reader opening</li>
-            
+                    
              
         </ul> <em>Applet</em>
         <ul>
@@ -104,7 +106,8 @@
             <li><!-- JAL-1841 -->RNA Structure consensus only computed for '()' base pair annotation</li>
             <li><!-- JAL-2215, JAL-1841 -->Enabling 'Ignore Gaps' results in zero scores for all base pairs in RNA Structure Consensus</li>
             <li><!-- JAL-2174-->Extend selection with columns containing feature not working</li>
-            
+            <li><!-- JAL-2275 -->Pfam format writer puts extra space at beginning of sequence</li>            
+            <li><!-- JAL-1827 -->Incomplete sequence extracted from pdb entry 3a6s </li>
             
           </ul>
           <em>Application</em>
@@ -119,12 +122,13 @@
             <li><!--  JAL-1989  -->Hide columns not mirrored in complement view in a cDNA/Protein splitframe</li>
             <li><!--  JAL-1369 -->Cannot save/restore representative sequence from project when only one sequence is represented</li>
             <li><!-- JAL-2002 -->Disabled 'Best Uniprot Coverage' option in Structure Chooser</li>
-            <li><!-- JAL-2215 -->Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel</li>            
+            <li><!-- JAL-2215 -->Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel</li>
+            <li><!-- JAL-1962 -->View mapping in structure view shows mappings between sequence and all chains in a PDB file</li>                        
             <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>
           <ul>
-            <li><!--  --></li>
+            <li><!-- JAL-2151 -->Incorrect columns are selected when hidden columns present before start of sequence</li>
           </ul>
         </div>
       </td>