JAL-1577 release notes

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 0837cb0..b183d36 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -62,16 +62,18 @@
             <li><!-- JAL---></li>
             <li><!-- JAL---></li>
             <li><!-- JAL---></li>
-            <li><!-- JAL---></li>
+            <li><!-- JAL-2079 -->Updated download sites used for Rfam and Pfam sources to xfam.org</li>
+            <li><!-- JAL-2084 -->Disabled Rfam(Full) in the sequence fetcher</li>
             <li><!-- JAL-2123 -->Show residue labels in Chimera when mousing over sequences in Jalview</li>
             <li><!-- JAL-2027-->Support for reverse-complement coding regions in ENA and EMBL</li>
             <li><!-- JAL-1855, JAL-2113, JAL-2114-->Upgrade to EMBL XML 1.2 for ENA record retrieval</li>
+            <li><!-- JAL-2027 -->Support for ENA CDS records with reverse complement operator</li>
             <li><!--  JAL 1812 -->New 'execute Groovy script' option in an alignment window's Calculate menu</li>
             <li><!--  JAL 1812 -->Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode</li>
             <li><!-- JAL-1369 --->Store/restore reference sequence in Jalview projects</li>
             <li><!-- JAL-1803-->Chain codes for a sequence's PDB associations are now saved/restored from project</li>
             <li><!-- JAL-2183-->Double click on an entry in Jalview's database chooser opens a sequence fetcher</li>
-            <li><!-- JAL-2183-->Free-text search client for UniProt using the UniProt web API</li>
+            <li><!-- JAL-1563-->Free-text search client for UniProt using the UniProt REST API</li>
             
              
         </ul> <em>Applet</em>
@@ -85,13 +87,15 @@
             <li><!-- JAL-2077 -->reinstate CTRL-click for opening pop-up menu on OSX</li>
             <li><!-- JAL-2018-->Export features in Jalview format (again) includes graduated colourschemes</li>
             <li><!-- JAL-1722, JAL-2001-->More responsive when working with big alignments and lots of hidden columns</li>
-            <li><!-- JAL-2053-->hidden column markers not always rendered at right of alignment window</li>
+            <li><!-- JAL-2053-->Hidden column markers not always rendered at right of alignment window</li>
             <li><!-- JAL-2067, JAL-  -->Tidied up links in help file table of contents</li>
             <li><!-- JAL-2072  -->Feature based tree calculation not shown for DNA alignments</li>
             <li><!-- JAL-2075  -->Hidden columns ignored during feature based tree calculation</li>
             <li><!-- JAL-2065  -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
             <li><!--  JAL-2086  -->Cannot insert gaps into sequence when set as reference</li>
             <li><!-- JAL-2146 -->Alignment column in status incorrectly shown as &quot;Sequence position&quot; when mousing over annotation</li>
+            <li><!--  JAL-2099 -->Incorrect column numbers in ruler when hidden columns present</li>
+            <li><!--  JAL-1577 -->Colour by RNA Helices not enabled when user created annotation added to alignment</li>
             
           </ul>
           <em>Application</em>
@@ -105,6 +109,7 @@
             <li><!--  JAL-1011  -->Columns are suddenly selected in other alignments and views when revealing hidden columns</li>
             <li><!--  JAL-1989  -->Hide columns not mirrored in complement view in a cDNA/Protein splitframe</li>
             <li><!--  JAL-1369 -->Cannot save/restore representative sequence from project when only one sequence is represented</li>
+            <li><!-- JAL-2002 -->Disabled 'Best Uniprot Coverage' option in Structure Chooser</li>
             
             <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>