release notes

[jalview.git] / help / html / releases.html

diff --git a/help/html/releases.html b/help/html/releases.html
index 12b6706..d135a6e 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -79,6 +79,12 @@ li:before {
           <ul>
           <li><!-- JAL-2360,JAL-2371, -->More robust colours and shader model for alignments and groups</li>
           <li><!--  JAL-384 -->Custom shading schemes created via groovy scripts</li>
+          <li><!--  JAL-2491 -->linked scrolling of CDS/Protein views via Overview or sequence motif search operations</li>
+          <li><!--  JAL-2526 -->Efficiency improvements for interacting with alignment and overview windows</li>
+            <li>
+              <!-- JAL-2535 -->Posterior probability annotation from
+              Stockholm files imported as sequence associated annotation
+            </li>
           </ul>
           <em>Application</em>
           <ul>
@@ -90,7 +96,7 @@ li:before {
             <li><!-- JAL-1476 -->Warning in alignment status bar when there are not enough columns to superimpose structures in Chimera</li>
           <li><!-- JAL-1596 -->Faster Chimera/Jalview communication by file-based command exchange</li>  
           <li><!-- JAL-2316, -->URLs for viewing database cross-references provided by identifiers.org and the EMBL-EBI's MIRIAM DB</li>
-          
+          <li><!-- JAL-2549 -->Updated JABAWS client to v2.2</li>
           </ul>
           <em>Experimental features</em>
           <ul>
@@ -105,7 +111,6 @@ li:before {
           <li><!--  --></li>
           </ul>
           <em>Test Suite</em>
-          <ul><li><!-- JAL-2314, -->Test suite expanded and debugged (over 940 functional unit tests, only 3 failing due to ongoing work!)</li>
           <li><!--  JAL-2474 -->Added PrivelegedAccessor to test suite</li>
           <li><!-- JAL-2326 -->Prevent or clear modal dialogs raised during tests</li>
           <li><!--  -->  
@@ -148,7 +153,8 @@ li:before {
           <li><!-- JAL-2386 -->'Apply to all groups' setting when changing colour does not apply Conservation slider value to all groups</li>
           <li><!-- JAL-2385 -->Colour threshold slider doesn't update to reflect currently selected view or group's shading thresholds</li>
           <li><!-- JAL-2373 -->Percentage identity and conservation menu items do not show a tick or allow shading to be disabled</li>
-          <li><!-- JAL-2385 -->Conservation shading or PID threshold lost when base colourscheme changed if slider not visible</li> 
+          <li><!-- JAL-2385 -->Conservation shading or PID threshold lost when base colourscheme changed if slider not visible</li>
+          <li><!-- JAL-2547 -->Sequence features shown in tooltip for gaps before start of features</li> 
           </ul>
           <em>Application</em>
           <ul>
@@ -172,7 +178,9 @@ li:before {
           </ul>
           <em>New Known Issues</em>
           <ul>
-          <li></li>
+          <li><!--  JAL-2566 -->Protein/CDS view scrolling not always in phase after a sequence motif find operation</li>
+          <li><!-- JAL-2563 -->Status bar doesn't show positions for ambiguous amino acids</li>
+          <li><!-- JAL-2550 -->Importing annotation file with rows containing just upper and lower case letters are interpreted as WUSS rna secondary structure symbols</li>  
           </ul>
           
           </div>