<p><strong>Release History</strong> </p>\r
<table border="1">\r
<tr> \r
- <td><div align="center"><em><strong>Release</strong></em></div></td>\r
- <td><div align="center"><em><strong>New Features</strong></em></div></td>\r
- <td><div align="center"><em><strong>Issues Resolved</strong></em></div></td>\r
+ <td width="60" nowrap><div align="center"><em><strong>Release</strong></em></div></td>\r
+ <td ><div align="center"><em><strong>New Features</strong></em></div></td>\r
+ <td ><div align="center"><em><strong>Issues Resolved</strong></em></div></td>\r
+ </tr>\r
+ <tr> \r
+ <td><div align="center"><strong>2.2.1</strong><br>\r
+ 12/2/07</div></td>\r
+ <td><ul>\r
+ <li>Non standard characters can be read and displayed\r
+ <li>Annotations/Features can be imported/exported to the applet via textbox\r
+ <li>Applet allows editing of sequence/annotation/group name & description\r
+ <li>Preference setting to display sequence name in italics\r
+ <li>Annotation file format extended to allow Sequence_groups\r
+ to be defined\r
+ <li>Default opening of alignment overview panel can be specified in\r
+ preferences\r
+ <li>PDB residue numbering annotation added to associated sequences\r
+ </ul></td>\r
+ <td> <ul>\r
+ <li>Applet crash under certain Linux OS with Java 1.6 installed\r
+ <li>Annotation file export / import bugs fixed\r
+ <li>PNG / EPS image output bugs fixed</ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td><div align="center"><strong>2.2</strong><br>\r
+ 27/11/06</div></td>\r
+ <td><ul>\r
+ <li>Multiple views on alignment \r
+ <li>Sequence feature editing \r
+ <li>"Reload" alignment \r
+ <li>"Save" to current filename \r
+ <li>Background dependent text colour \r
+ <li>Right align sequence ids \r
+ <li>User-defined lower case residue colours \r
+ <li>Format Menu \r
+ <li>Select Menu \r
+ <li>Menu item accelerator keys \r
+ <li>Control-V pastes to current alignment \r
+ <li>Cancel button for DAS Feature Fetching \r
+ <li>PCA and PDB Viewers zoom via mouse roller \r
+ <li>User-defined sub-tree colours and sub-tree selection \r
+ <li>'New Window' button on the 'Output to Text box' </ul></td>\r
+ <td> <ul>\r
+ <li>New memory efficient Undo/Redo System \r
+ <li>Optimised symbol lookups and conservation/consensus calculations \r
+ <li>Region Conservation/Consensus recalculated after edits \r
+ <li>Fixed Remove Empty Columns Bug (empty columns at end of alignment) \r
+ <li>Slowed DAS Feature Fetching for increased robustness. \r
+ <li>Made angle brackets in ASCII feature descriptions display correctly \r
+ <li>Re-instated Zoom function for PCA \r
+ <li>Sequence descriptions conserved in web service analysis results \r
+ <li>Uniprot ID discoverer uses any word separated by ∣ \r
+ <li>WsDbFetch query/result association resolved \r
+ <li>Tree leaf to sequence mapping improved \r
+ <li>Smooth fonts switch moved to FontChooser dialog box. </ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td> <div align="center"><strong>2.1.1</strong><br>\r
+ 12/9/06</div></td>\r
+ <td><ul>\r
+ <li>Copy consensus sequence to clipboard</li>\r
+ </ul></td>\r
+ <td><ul>\r
+ <li>Image output - rightmost residues are rendered if sequence id panel \r
+ has been resized</li>\r
+ <li>Image output - all offscreen group boundaries are rendered </li>\r
+ <li>Annotation files with sequence references - all elements in file are \r
+ relative to sequence position</li>\r
+ <li>Mac Applet users can use Alt key for group editing</li>\r
+ </ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td><div align="center"><strong>2.1</strong><br>\r
+ 22/8/06</div></td>\r
+ <td><ul>\r
+ <li>MAFFT Multiple Alignment in default Web Service list</li>\r
+ <li>DAS Feature fetching</li>\r
+ <li>Hide sequences and columns</li>\r
+ <li>Export Annotations and Features</li>\r
+ <li>GFF file reading / writing</li>\r
+ <li>Associate structures with sequences from local PDB files</li>\r
+ <li>Add sequences to exisiting alignment</li>\r
+ <li>Recently opened files / URL lists</li>\r
+ <li>Applet can launch the full application</li>\r
+ <li>Applet has transparency for features (Java 1.2 required)</li>\r
+ <li>Applet has user defined colours parameter</li>\r
+ <li>Applet can load sequences from parameter "sequence<em>x</em>"</li>\r
+ </ul></td>\r
+ <td><ul>\r
+ <li>Redundancy Panel reinstalled in the Applet</li>\r
+ <li>Monospaced font - EPS / rescaling bug fixed</li>\r
+ <li>Annotation files with sequence references bug fixed</li>\r
+ </ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td><div align="center"><strong>2.08.1</strong><br>\r
+ 2/5/06</div></td>\r
+ <td><ul>\r
+ <li>Change case of selected region from Popup menu</li>\r
+ <li>Choose to match case when searching</li>\r
+ <li>Middle mouse button and mouse movement can compress / expand the visible \r
+ width and height of the alignment</li>\r
+ </ul></td>\r
+ <td><ul>\r
+ <li>Annotation Panel displays complete JNet results</li>\r
+ </ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td><div align="center"><strong>2.08b</strong><br>\r
+ 18/4/06</div></td>\r
+ <td> </td>\r
+ <td><ul>\r
+ <li>Java 1.5 bug - InternalMessageDialog fix for threads</li>\r
+ <li>Righthand label on wrapped alignments shows correct value</li>\r
+ </ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td><div align="center"><strong>2.08</strong><br>\r
+ 10/4/06</div></td>\r
+ <td><ul>\r
+ <li>Editing can be locked to the selection area</li>\r
+ <li>Keyboard editing</li>\r
+ <li>Create sequence features from searches</li>\r
+ <li>Precalculated annotations can be loaded onto alignments</li>\r
+ <li>Features file allows grouping of features</li>\r
+ <li>Annotation Colouring scheme added</li>\r
+ <li>Smooth fonts off by default - Faster rendering</li>\r
+ <li>Choose to toggle Autocalculate Consensus On/Off</li>\r
+ </ul></td>\r
+ <td><ul>\r
+ <li>Drag & Drop fixed on Linux</li>\r
+ <li>Jalview Archive file faster to load/save, sequence descriptions saved. \r
+ </li>\r
+ </ul></td>\r
</tr>\r
<tr> \r
<td><div align="center"><strong>2.07</strong><br>\r
<li>Sequence Feature retrieval and display enhanced</li>\r
<li>Choose to output sequence start-end after sequence name for file output</li>\r
<li>Sequence Fetcher WSDBFetch@EBI</li>\r
+ <li>Applet can read feature files, PDB files and can be used for HTML \r
+ form input</li>\r
</ul></td>\r
<td><ul>\r
<li>HTML output writes groups and features</li>\r
<li>Group editing is Control and mouse click</li>\r
- <li>Applet can read feature files, PDB files and can be used for HTML \r
- form input</li>\r
+ <li>File IO bugs</li>\r
</ul></td>\r
</tr>\r
<tr> \r
</ul></td>\r
</tr>\r
<tr> \r
- <td height="63">\r
-<div align="center"><strong>2.05b</strong><br>\r
+ <td height="63"> <div align="center"><strong>2.05b</strong><br>\r
15/9/05</div></td>\r
<td><ul>\r
<li>Choose EPS export as lineart or text</li>\r