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<em>Partition Function (-p)</em><br /> Calculate the Partition
Function and base pairing probability matrix in addition to the mfe
structure. A coarse representation of the pair probabilities in the
- from of a pseudo bracket notation, as well as the centroid structure
+ form of a pseudo bracket notation, as well as the centroid structure
derived from the pair probabilities are displayed. The most likely
base pairings are stored in a separate file by RNAalifold and
represented in Jalview by a bar graph annotation line labeled
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git://source.jalview.org / jalview.git / blobdiff