-<html>\r
-<head><title>Web Services</title></head>\r
-<body>\r
-<p><strong>Web services</strong></p>\r
-<p>Originally Jalview used SRS server to retrieve sequence features for a given\r
- alignment. In addition certain remote alignment programs could be called from\r
- the Jalview interface and the results displayed in a new alignment panel. </p>\r
-<p>Jalview's web based computations are now being developed further,\r
- using SOAP based services to expose protein sequence alignment and\r
- secondary structure prediction programs. These services actually run\r
- on the cluster based in Dundee, and maintained by the Barton group.\r
-</p><p>In the future, Jalview will be able to discover services\r
- dynamically, and the repertoire will include methods for repeat\r
- analysis, sequence identification and remote homology\r
- detection. The web service methodology will also allow potentially\r
- expensive Jalview analysis functions like <a\r
- href="../calculations/pca.html">PCA</a> to be distributed, if\r
- necessary, when the user is dealing with very large numbers of sequences.</p>\r
+ <html>\r
+ <head><title>Web Services</title></head>\r
+ <body>\r
+ <p><strong>Web services</strong></p>\r
+ \r
+<p>A variety of web services are available from the Alignment window's <strong> \r
+ Web Service</strong> menu. </p>\r
+ <p>Jalview's distributed computations are SOAP based services exposing\r
+ protein sequence alignment and secondary structure prediction programs. These services actually run\r
+ on the cluster based in the School of Life Sciences, University of\r
+ Dundee, and are maintained by the Barton group.\r
+ </p>\r
+ <p><strong>Web Service Dialog Box</strong></p>\r
+<img src="clwqueued.gif">\r
+<p>\r
+ This dialog box is displayed when a web service job\r
+ is submitted. It gives the name of the service and\r
+ any method citation information, and monitors the\r
+ progress of the calculation. The cancel button will\r
+ permanently cancel the job, but this is only\r
+ possible for some services.\r
+ </p>\r
+ <p>Current services:\r
+ <ul>\r
+ <li>ClustalW Multiple Alignment<br>\r
+ The clustal W service remains one of the more popular Jalview features.\r
+ </li>\r
+ <li>Muscle Multiple Alignment<br>\r
+ High Quality and High Throughput multiple alignments of proteins. This\r
+ method can sometimes be more accurate than ClustalW when dealing with\r
+ diverse sets of sequences.\r
+ </li>\r
+ <li>JNet Secondary Structure Prediction<br>\r
+ This is a front end to the existing JNet www server.\r
+ </li>\r
+ </ul>\r
+ </p>\r
+ <p>Watch this space! These are some of the services\r
+ planned to be released soon:<ul>\r
+ <li>Repeat analysis\r
+ </li>\r
+ <li>Remote Homology Detection<br>\r
+ </li>\r
+ </ul>\r
+ In the future, Jalview will also be able to new discover services\r
+ dynamically, and distribute expensive analysis functions like <a\r
+ href="../calculations/pca.html">PCA</a> to the Dundee machines.</p>\r
</body>\r
</html>\r
git://source.jalview.org / jalview.git / blobdiff