+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
<html>
<head>
<title>Web Services</title>
<p>Jalview includes clients for a variety of web services for both
bioinformatic data retrieval and analysis.
<ul>
- <li>The <a href="../features/seqfetcher.html">Sequence Fetcher</a>
+ <li>The <a href="../features/seqfetch.html">Sequence Fetcher</a>
utilises web services for sequence, alignment and structure retrieval
provided by the European Bioinformatics Institute (EBI) and Distributed
Annotation System servers that are capable of serving sequences.</li>
- <li>The DAS Feature Fetcher enables the retrieval and
- visualization of features from DAS annotation sources</li>
+ <li>The <a href="../features/dasfeatures.html">DAS Feature
+ Fetcher</a> enables the retrieval and visualization of features from DAS
+ annotation sources</li>
+ <li>The <a href="dbreffetcher.html">Database Reference Fetcher</a>
+ transfers database references from records available from DAS or the
+ public sequence databases.</li>
<li>Jalview SOAP Web Services for sequence and alignment analysis
are provided by the University of Dundee, and are available from the
Alignment window's <strong> Web Service</strong> menu.</li>
of Life Sciences, University of Dundee, and are maintained by the Barton
group.</p>
<p><strong><a name="envision2">Envision2 Services</a></strong></p>
-<p>Jalview 2.5 includes a client to enable the user to
-submit one or more sequences or sequence IDs to analysis workflows provided
-by the <a href="http://www.ebi.ac.uk/enfin-srv/envision2">EnVision2
-web application</a>. This allows Jalview users to easily access the EnCore network of
-databases and analysis services developed by members of <a href="http://www.enfin.org">ENFIN</a>.</p>
-<br/>
+<p>Jalview 2.5 includes a client to enable the user to submit one or
+more sequences or sequence IDs to analysis workflows provided by the <a
+ href="http://www.ebi.ac.uk/enfin-srv/envision2">EnVision2 web
+application</a>. This allows Jalview users to easily access the EnCore
+network of databases and analysis services developed by members of <a
+ href="http://www.enfin.org">ENFIN</a>.</p>
+<br />
<p><strong>Web Service Dialog Box</strong></p>
<img src="clwqueued.gif">
<p>This dialog box is displayed when a web service job is submitted.
git://source.jalview.org / jalview.git / blobdiff