<li>If a set of sequences are selected, and they appear to be aligned,\r
then the alignment will be used for a Jnet prediction on the\r
<strong>first</strong> sequence selected in the set (that is, the one\r
-that was first clicked on).\r
+nearest the top of the alignment window).\r
</li> \r
</ul>\r
<p>The result of a JNet prediction for a sequence is a new annotated\r