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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
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* PURPOSE. See the GNU General Public License for more details.
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* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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<head>
<title>JNet Secondary Structure Prediction</title>
</head>
The JNet method uses several different neural networks and decides on
the most likely prediction via a jury network. <br>
<ul>
- <li>
- Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3 secondary structure prediction server
- <em>Nucleic Acids Research</em> <strong>36</strong> W197-W201</li>
- <li>
- Cuff J. A and Barton G.J (1999) Application of enhanced
+ <li>Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3
+ secondary structure prediction server <em>Nucleic Acids Research</em> <strong>36</strong>
+ W197-W201</li>
+ <li>Cuff J. A and Barton G.J (1999) Application of enhanced
multiple sequence alignment profiles to improve protein secondary
structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li>
</ul>
invoked to rationalise significantly different primary predictions.</em></li>
</ul>
</p>
+<em>As of Jalview 2.6, the Jnet service accessed accessed via the
+'Secondary structure prediction' submenu should be considered a legacy
+Jalview SOAP service, and will be replaced in the near future by a
+JABAWS Jnet service.</em>
+
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