nearest the top of the alignment window).\r
</li>\r
</ul>\r
+<p><strong>Note</strong>: JNet secondary structure prediction is a\r
+ 'non-column-separable' service - predictions are based on the\r
+ sequence profile of contiguous stretches of amino-acid sequence. This\r
+ means that all columns of the alignment, or selection will be submitted\r
+ for prediction, not just the visible ones (see <a\r
+ href="../features/hiddenRegions.html">hiding columns</a>).\r
<p>The result of a JNet prediction for a sequence is a new annotated\r
alignment window:</p>\r
<img src="jnetprediction.gif">\r