<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
<head>
<title>What's new ?</title>
</head>
<body>
<p><strong>What's new ?</strong></p>
+<p>Jalview 2.6 introduces new web services, and includes an updated
+version of the Jmol molecular graphics visualization system. See the <a
+ href="releases.html#Jalview2.6">release history</a> for the full
+details.</p>
+<p><strong>Highlights in Jalview Version 2.6</strong></p>
+<ul>
+ <li><a href="webServices/JABAWS.html">JABA Web Services</a> for
+ multiple alignment using:
+ <ul>
+ <li>ClustalW</li>
+ <li>MAFFT</li>
+ <li>Muscle</li>
+ <li>ProbCons</li>
+ <li>T-COFFEE</li>
+ </ul>
+ </li>
+ <li>User modifiable alignment service parameters</li>
+ <li>Visualization of superposed structures associated with protein
+ or nucleotide sequence alignments.</li>
+ <li>Export coordinates and projection as CSV from PCA viewer</li>
+</ul>
-<p><strong>Jalview Version 2.3</strong></p>
-<ul>Jmol 11 integration<br>
-PDB views in Jalview XML<br>
-Slide sequences<br>
-Edit sequence in place<br>
-EMBL CDS features<br>
-DAS Feature mapping<br>
-Feature ordering<br>
-Alignment Properties<br>
-Annotation Scores<br>
-Sort by scores<br>
-Feature/annotation editing in applet<br>
+<p><strong>Issues Resolved (a select list - see release history for details)</strong></p>
+<ul>
+ <li>clustalx colourscheme colours Ds preferentially when both D+E
+ are present in over 50% of the column</li>
+ <li>Prevent sequence fetcher from replacing ',' for ';' when querying DAS sequence sources</li>
+ <li>InstallAnywhere builds fail to launch on OS X java 10.5 update
+ 4 (due to apple Java 1.6 update)</li>
</ul>
-<p> </p>
-<p><strong>Issues Resolved</strong></p>
-<p><br>
-Headless state operation in 2.2.1
-<br>Incorrect and unstable DNA pairwise alignment
-<br>
-Cut and paste of sequences with annotation
-<br>
-Feature group display state in XML<br>
-Feature ordering in XML<br>
-2.2.1 applet had no feature transparency<br>
-</p>
-<p> </p>
<p>See the <a href="releases.html">Release History</a> page for
details of all new features and resolved issues.</p>
</body>
git://source.jalview.org / jalview.git / blobdiff