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[jalview.git] / help / html / whatsNew.html

diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index b35c9ae..31b3f1f 100755 (executable)
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -11,20 +11,20 @@
 <p>If you were familiar with the original Jalview, here is a list of important\r
   features you should know about the current development:</p>\r
 <ul>\r
-  <li>Editing sequences is no longer the default when mouse clicking the alignment. \r
-    Instead, mouse clicking on the alignment creates a &quot;selection region&quot; \r
+  <li>Editing sequences is no longer the default when mouse clicking the alignment.\r
+    Instead, mouse clicking on the alignment creates a &quot;selection region&quot;\r
     which may be full sequences or groups of residues.</li>\r
-  <li>To insert or edit the gaps in one sequence in alignment, the &quot;Shift&quot; \r
+  <li>To insert or edit the gaps in one sequence in alignment, the &quot;Shift&quot;\r
     key must be held down when dragging the mouse.</li>\r
-  <li>To insert or edit gaps for a group of sequences, the &quot;Alt&quot; key \r
+  <li>To insert or edit gaps for a group of sequences, the &quot;Alt&quot; key\r
     (or in X windows the &quot;Control&quot; key) must be held down.</li>\r
-  <li>Selecting colour schemes in the colour menu either sets just the &quot;background&quot; \r
-    colourscheme for the alignment, or - when the tickbox &quot;Apply colour to \r
-    all groups&quot; is ticked, applies the scheme to the background and all groups \r
+  <li>Selecting colour schemes in the colour menu either sets just the &quot;background&quot;\r
+    colourscheme for the alignment, or - when the tickbox &quot;Apply colour to\r
+    all groups&quot; is ticked, applies the scheme to the background and all groups\r
     defined on the alignment.</li>\r
-  <li>Use the right mouse button (apple and click on the Mac) whilst the pointer \r
-    is within the selection area to access the &quot;define&quot; region menu \r
-    to define a new region, give it a name, and change its colourscheme and display \r
+  <li>Use the right mouse button (apple and click on the Mac) whilst the pointer\r
+    is within the selection area to access the &quot;define&quot; region menu\r
+    to define a new region, give it a name, and change its colourscheme and display\r
     properties.</li>\r
   <li>Conservation is automatically updated whenever the alignment is edited</li>\r
   <li>There is no &quot;quick draw&quot; option</li>\r
@@ -37,39 +37,66 @@
     <td><div align="center"><em><strong>Issues Resolved</strong></em></div></td>\r
   </tr>\r
   <tr> \r
-    <td> <div align="center"><strong>2.0</strong><br>\r
-        20/6/05</div></td>\r
-    <td ><ul>\r
-        <li> New codebase</li>\r
+    <td><div align="center"><strong>2.07</strong><br>\r
+        7 /12/05</div></td>\r
+    <td><ul>\r
+        <li>PDB Structure Viewer enhanced</li>\r
+        <li>Sequence Feature retrieval and display enhanced</li>\r
+        <li>Choose to output sequence start-end after sequence name for file output</li>\r
+        <li>Sequence Fetcher WSDBFetch@EBI</li>\r
+      </ul></td>\r
+    <td><ul>\r
+        <li>HTML output writes groups and features</li>\r
+        <li>Group editing is Control and mouse click</li>\r
+        <li>Applet can read feature files, PDB files and can be used for HTML \r
+          form input</li>\r
       </ul></td>\r
-    <td >&nbsp;</td>\r
   </tr>\r
   <tr> \r
-    <td><div align="center"><strong>2.01</strong><br>\r
-        12/7/05</div></td>\r
+    <td><div align="center"><strong>2.06</strong><br>\r
+        28/9/05</div></td>\r
     <td><ul>\r
-        <li>Use delete key for deleting selection.</li>\r
-        <li>Use Mouse wheel to scroll sequences.</li>\r
-        <li>Help file updated to describe how to add alignment annotations.</li>\r
-        <li>Version and build date written to build properties file.</li>\r
-        <li>InstallAnywhere installation will check for updates at launch of Jalview.</li>\r
+        <li>View annotations in wrapped mode</li>\r
+        <li>More options for PCA viewer</li>\r
       </ul></td>\r
     <td><ul>\r
-        <li>Delete gaps bug fixed.</li>\r
-        <li>FileChooser sorts columns.</li>\r
-        <li>Can remove groups one by one.</li>\r
-        <li>Filechooser icons installed.</li>\r
-        <li>Finder ignores return character when searching. Return key will initiate \r
-          a search.<br>\r
-        </li>\r
+        <li>GUI bugs resolved</li>\r
+        <li>Runs with -nodisplay from command line</li>\r
       </ul></td>\r
   </tr>\r
   <tr> \r
-    <td> <div align="center"><strong>2.02</strong><br>\r
-        18/7/05</div></td>\r
-    <td>&nbsp;</td>\r
+    <td><div align="center"><strong>2.05b</strong><br>\r
+        15/9/05</div></td>\r
     <td><ul>\r
-        <li>Copy &amp; Paste order of sequences maintains alignment order.</li>\r
+        <li>Choose EPS export as lineart or text</li>\r
+        <li>Jar files are executable</li>\r
+        <li>Can read in Uracil - maps to unknown residue</li>\r
+      </ul></td>\r
+    <td><ul>\r
+        <li>Known OutOfMemory errors give warning message</li>\r
+        <li>Overview window calculated more efficiently</li>\r
+        <li>Several GUI bugs resolved</li>\r
+      </ul></td>\r
+  </tr>\r
+  <tr> \r
+    <td><div align="center"><strong>2.05</strong><br>\r
+        30/8/05</div></td>\r
+    <td><ul>\r
+        <li>Edit and annotate in &quot;Wrapped&quot; view</li>\r
+      </ul></td>\r
+    <td><ul>\r
+        <li>Several GUI bugs resolved</li>\r
+      </ul></td>\r
+  </tr>\r
+  <tr> \r
+    <td><div align="center"><strong>2.04</strong><br>\r
+        24/8/05</div></td>\r
+    <td><ul>\r
+        <li>Hold down mouse wheel &amp; scroll to change font size</li>\r
+      </ul></td>\r
+    <td><ul>\r
+        <li>Improved JPred client reliability</li>\r
+        <li>Improved loading of Jalview files</li>\r
       </ul></td>\r
   </tr>\r
   <tr> \r
@@ -88,6 +115,42 @@
         <li>InstallAnywhere download for Sparc Solaris</li>\r
       </ul></td>\r
   </tr>\r
+  <tr> \r
+    <td> <div align="center"><strong>2.02</strong><br>\r
+        18/7/05</div></td>\r
+    <td>&nbsp;</td>\r
+    <td><ul>\r
+        <li>Copy &amp; Paste order of sequences maintains alignment order.</li>\r
+      </ul></td>\r
+  </tr>\r
+  <tr> \r
+    <td><div align="center"><strong>2.01</strong><br>\r
+        12/7/05</div></td>\r
+    <td><ul>\r
+        <li>Use delete key for deleting selection.</li>\r
+        <li>Use Mouse wheel to scroll sequences.</li>\r
+        <li>Help file updated to describe how to add alignment annotations.</li>\r
+        <li>Version and build date written to build properties file.</li>\r
+        <li>InstallAnywhere installation will check for updates at launch of Jalview.</li>\r
+      </ul></td>\r
+    <td><ul>\r
+        <li>Delete gaps bug fixed.</li>\r
+        <li>FileChooser sorts columns.</li>\r
+        <li>Can remove groups one by one.</li>\r
+        <li>Filechooser icons installed.</li>\r
+        <li>Finder ignores return character when searching. Return key will initiate \r
+          a search.<br>\r
+        </li>\r
+      </ul></td>\r
+  </tr>\r
+  <tr> \r
+    <td> <div align="center"><strong>2.0</strong><br>\r
+        20/6/05</div></td>\r
+    <td ><ul>\r
+        <li> New codebase</li>\r
+      </ul></td>\r
+    <td >&nbsp;</td>\r
+  </tr>\r
 </table>\r
 <p>&nbsp;</p>\r
 </body>\r