-<html>\r
-<head><title>What's new ?</title></head>\r
-<body>\r
-<p><strong>What's new ?</strong> </p>\r
-<p>Jalview Version 2.08</p>\r
-<p> <a href="editing/index.html">Editing</a> can be locked to the selection area. \r
- Any edits made within the locked area do not affect the rest of the alignment.</p>\r
-<p> Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list \r
- of keyboard controls, look <a href="keys.html">here</a>.</p>\r
-<p> <a href="features/search.html">Create sequence features from searches</a>. \r
- Previously results from searches were added as alignment positions, which was \r
- wrong. Now the search results are saved as sequence features and their visibility \r
- and colour can be modified using the <a href="features/seqfeatures.html">Sequence \r
- Feature Settings</a> window.</p>\r
-<p> Precalculated annotations can be loaded onto alignments. The <a href="features/annotationsFormat.html">Annotation \r
- File</a> format is a tab delimited set of values.</p>\r
-<p> <a href="features/featuresFormat.html">Features file</a> allows grouping of \r
- features. The <a href="features/seqfeatures.html">Sequence Feature Settings</a> \r
- window then makes it very easy to set the visibility of groups of features. \r
-</p>\r
-<p> <a href="colourSchemes/annotationColouring.html">Annotation Colouring</a> \r
- scheme added. A new colour scheme which colours columns on a per-column value.</p>\r
-<p> Smooth fonts off by default - faster rendering. Toggle on / off from the View \r
- menu, or can be set in Preferences.</p>\r
-<p> Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.<br>\r
-</p>\r
-<p><strong>Issues Resolved</strong></p>\r
-<p> Drag & Drop fixed on Linux</p>\r
-<p> Jalview Archive file faster to load/save, sequence descriptions saved.<br>\r
-</p>\r
-<p>See the <a href="releases.html">Release History</a> page for details of all\r
- new features and resolved issues. </p>\r
-</body>\r
-</html>\r
+<html>
+<head><title>What's new ?</title></head>
+<body>
+<p><strong>What's new ?</strong> </p>
+
+<p><strong>Jalview Version 2.2</strong></p>
+<p>Multiple views with different styles, colours, hidden regions for one alignment
+</p>
+<p>Easily add, amend and delete sequence features
+</p>
+<p>"Reload" alignment from File or URL to revert to original
+</p>
+<p>"Save" to current filename or "Save As" to new filename
+</p>
+<p>Set different text colour for dark or light background
+</p>
+<p>Right align sequence ids
+</p>
+<p>Set colour of lower case residues in a user defined colour scheme
+</p>
+<p>Menu Rearrangements: New <strong>Format</strong> for alignment layout and <strong>Select</strong> for region selection.
+</p>
+</p><p>Menu item accelerator keys added
+</p>
+<p>Control-V pastes sequences to active window, Control-Shift-V pastes to a new window.
+</p>
+<p>Raise/Minimise alignment and all associated windows from desktop window's <strong>window</strong> menu
+</p>
+<p>Select and colour whole branches of a tree</p>
+<p>'New Window' button on the 'Output to Text box' alignment output
+option to open a new alignment window after editing.</p>
+<p><strong>Issues Resolved</strong></p>
+</p>
+<p>
+Optimisations for large alignments: faster multithreaded calculations and Undo/Redo system.
+</p>
+<p>Remove empty columns - if empty columns exist at the end of the
+alignment bug fixed.
+</p>
+<p>DAS feature fetching slowed down, doesn't overload DAS servers
+</p>
+<p>DAS feature fetching can be cancelled
+</p>
+<p>Correct display of > and < symbols for feature descriptions without explicit <html> tags.
+</p>
+<p>Zoom working in PCA viewer
+</p>
+<p>Sequence Descriptions retained after running a web service
+</p>
+<p> </p>
+<p>See the <a href="releases.html">Release History</a> page for details of all
+ new features and resolved issues. </p>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff