<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
<head>
<title>What's new ?</title>
</head>
<body>
<p><strong>What's new ?</strong></p>
-<p><strong>Jalview Version 2.4</strong></p>
+<p>The Jalview 2.6.1 release fixes a number of minor bugs affecting
+Jalview operation, including issues affecting the import and export of
+PIR files and working with multiple multiple structure superpositions.
+For full details see the <a href="releases.html#Jalview2.6.1">Jalview
+2.6.1 release history</a>.</p>
+<p><strong>Highlights in Jalview Version 2.6</strong></p>
<ul>
- VAMSAS Interoperation Client<br>
- DAS Sequence Fetching<br>
- PFAM full alignment retrieval<br>
- DNA/Protein Product traversal (Experimental)</br>
- .. (more to come)
-</ul>
-<p><strong>Issues Resolved</strong></p>
-<ul>
- .. (more to come)
+ <li><a href="webServices/JABAWS.html">JABA Web Services</a> for
+ multiple alignment using:
+ <ul>
+ <li>ClustalW</li>
+ <li>MAFFT</li>
+ <li>Muscle</li>
+ <li>ProbCons</li>
+ <li>T-COFFEE</li>
+ </ul>
+ </li>
+ <li>User modifiable alignment service parameters</li>
+ <li>Visualization of superposed structures associated with protein
+ or nucleotide sequence alignments.</li>
+ <li>Export coordinates and projection as CSV from PCA viewer</li>
</ul>
-<--<p><strong>Jalview Version 2.3</strong></p>
+<p><strong>Issues Resolved (a select list - see release
+history for details)</strong></p>
<ul>
- Jmol 11.0.2 integration<br>
- PDB views stored in Jalview XML files<br>
- Slide sequences<br>
- Edit sequence in place<br>
- EMBL CDS features<br>
- DAS Feature mapping<br>
- Feature ordering<br>
- Alignment Properties<br>
- Annotation Scores<br>
- Sort by scores<br>
- Feature/annotation editing in applet<br>
+
</ul>
-<p><strong>Issues Resolved</strong></p>
-<ul>
- Headless state operation in 2.2.1 <br>
- Incorrect and unstable DNA pairwise alignment <br>
- Cut and paste of sequences with annotation <br>
- Feature group display state in XML<br>
- Feature ordering in XML<br>
- 2.2.1 applet had no feature transparency<br>
- Number pad keys can be used in cursor mode<br>
- Structure Viewer mirror image resolved</p>
- </ul>-->
-<p> </p>
<p>See the <a href="releases.html">Release History</a> page for
details of all new features and resolved issues.</p>
</body>
git://source.jalview.org / jalview.git / blobdiff