-<html>\r
-<head><title>What's new ?</title></head>\r
-<body>\r
-<p><strong>What's new ?</strong> </p>\r
-<p>Jalview Version 2.07 </p>\r
-<p><a href="features/seqfetch.html">Sequence Fetcher</a> has been added to quickly \r
- retrieve sequences with known ids from several databases.</p>\r
-<p><a href="features/seqfeatures.html">Sequence Features enhanced</a> to allow \r
- the user to display all features of a Uniprot file on the alignment and subsequently \r
- colour, hide or show overlapping features. </p>\r
-<p><a href="io/fileformats.html">Choose to omit /start-end from sequences when \r
- saving files.</a> This is important for saving files to be used by some programs \r
- which cannot read the original Jalview sequence output with the appended /start-end.</p>\r
-<p><a href="features/pdbviewer.html">PDB structure viewer enhanced</a>. Mapping \r
- between sequence and structure has been enhanced, colours on the alignment are \r
- reflected in the structure viewer.</p>\r
-<p><a href="http://www.jalview.org/examples/applet.html">Jalview Applet can read \r
- in feature files, PDB files be used as input to HTML form</a> See the website \r
- to find out the new parameters available for the Applet Version of Jalview.</p>\r
-<p> </p>\r
-<p><strong>Issues Resolved</strong></p>\r
-<p>Group Editing is possible with Control and mouse click. Alt key and mouse press \r
- does not work as this translates as the middle mouse button, which since 2.04 \r
- is now used to scroll the alignment and change the font size. </p>\r
-<p>HTML export now writes groups and features which were previously missing.</p>\r
-<p> </p>\r
-<p>See the <a href="releases.html">Release History</a> page for details of all \r
- new features and resolved issues. </p>\r
-</body>\r
-</html>\r
+<html>
+<head>
+<title>What's new ?</title>
+</head>
+<body>
+<p><strong>What's new ?</strong></p>
+
+<p><strong>Jalview Version 2.2</strong></p>
+<p>Multiple views with different styles, colours, hidden regions for
+one alignment</p>
+<p>Easily add, amend and delete sequence features</p>
+<p>"Reload" alignment from File or URL to revert to
+original</p>
+<p>"Save" to current filename or "Save As" to
+new filename</p>
+<p>New <strong>"New Window"</strong> button on the
+"Output To Textbox" opens output window for quick 'sequence
+editing'.</p>
+<p>Set different text colour for dark or light background</p>
+<p>Right align sequence ids</p>
+<p>Set colour of lower case residues in a user defined colour scheme
+</p>
+<p>Menu Rearrangements: New <strong>Format</strong> for alignment
+layout and <strong>Select</strong> for region selection.</p>
+</p>
+<p>Menu item accelerator keys added</p>
+<p>Control-V pastes sequences to active window, Control-Shift-V
+pastes to a new window.</p>
+<p>Raise/Minimise alignment and all associated windows from desktop
+window's <strong>window</strong> menu</p>
+<p>Select and colour whole branches of a tree</p>
+<p>'New Window' button on the 'Output to Text box' alignment output
+option to open a new alignment window after editing.</p>
+<p><strong>Issues Resolved</strong></p>
+</p>
+<p>Optimisations for large alignments: faster multithreaded
+calculations and Undo/Redo system.</p>
+<p>Remove empty columns - if empty columns exist at the end of the
+alignment bug fixed.</p>
+<p>DAS feature fetching slowed down, doesn't overload DAS servers</p>
+<p>DAS feature fetching can be cancelled</p>
+<p>Correct display of > and < symbols for feature descriptions
+without explicit <html> tags.</p>
+<p>Zoom working in PCA viewer</p>
+<p>Sequence Descriptions retained after running a web service</p>
+<p> </p>
+<p>See the <a href="releases.html">Release History</a> page for
+details of all new features and resolved issues.</p>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff