<html>\r
-<head><title>What's new</title></head>\r
+<head><title>What's new ?</title></head>\r
<body>\r
-<p><strong>What's new</strong> </p>\r
-<p>If you can read this then you'll already have seen some of the recent changes\r
- made to Jalview.<br>\r
- Jalview takes advantage of some of the more recent user interface developments\r
- in the Java programming language. For instance Jalview is now a multi windowed\r
- application, this keeps all your Jalview windows neatly together in one main\r
- application window. </p>\r
-<p>If you were familiar with the original Jalview, here is a list of important\r
- features you should know about the current development:</p>\r
-<ul>\r
- <li>Editing sequences is no longer the default when mouse clicking the alignment.\r
- Instead, mouse clicking on the alignment will create a "selection region"\r
- which may be full sequences or groups of residues.</li>\r
- <li>To edit a sequence, the "Shift" key must be held down</li>\r
- <li>To edit groups, either the "Alt" key or the "Control"\r
- key must be held down.</li>\r
- <li>Colours maybe applied to the background, ie the whole alignment, or to selected\r
- regions. If the tickbox "Apply colour to all groups" is ticked (this\r
- is the default), then the colour will be applied to all groups.</li>\r
- <li>Use the right mouse button (apple and click on the mac) to define a selected\r
- region on the alignment as a new group. </li>\r
- <li>Conservation is automatically updated whenever the alignment is edited</li>\r
- <li>There is no "quick draw" option</li>\r
- <li>Edits can be undone! (and redone)</li>\r
-</ul>\r
+<p><strong>What's new ?</strong> </p>\r
+<p>Jalview Version 2.08</p>\r
+<p> <a href="editing/index.html">Editing</a> can be locked to the selection area. \r
+ Any edits made within the locked area do not affect the rest of the alignment.</p>\r
+<p> Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list \r
+ of keyboard controls, look <a href="keys.html">here</a>.</p>\r
+<p> <a href="features/search.html">Create sequence features from searches</a>. \r
+ Previously results from searches were added as alignment positions, which was \r
+ wrong. Now the search results are saved as sequence features and their visibility \r
+ and colour can be modified using the <a href="features/seqfeatures.html">Sequence \r
+ Feature Settings</a> window.</p>\r
+<p> Precalculated annotations can be loaded onto alignments. The <a href="features/annotationsFormat.html">Annotation \r
+ File</a> format is a tab delimited set of values.</p>\r
+<p> <a href="features/featuresFormat.html">Features file</a> allows grouping of \r
+ features. The <a href="features/seqfeatures.html">Sequence Feature Settings</a> \r
+ window then makes it very easy to set the visibility of groups of features. \r
+</p>\r
+<p> <a href="colourSchemes/annotationColouring.html">Annotation Colouring</a> \r
+ scheme added. A new colour scheme which colours columns on a per-column value.</p>\r
+<p> Smooth fonts off by default - faster rendering. Toggle on / off from the View \r
+ menu, or can be set in Preferences.</p>\r
+<p> Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.<br>\r
+</p>\r
+<p><strong>Issues Resolved</strong></p>\r
+<p> Drag & Drop fixed on Linux</p>\r
+<p> Jalview Archive file faster to load/save, sequence descriptions saved.<br>\r
+</p>\r
+<p>See the <a href="releases.html">Release History</a> page for details of all\r
+ new features and resolved issues. </p>\r
</body>\r
</html>\r
git://source.jalview.org / jalview.git / blobdiff