-<html>\r
-<head><title>What's new</title></head>\r
-<body>\r
-<p><strong>What's new</strong> </p>\r
-<p>If you can read this then you'll already have seen some of the recent changes\r
- made to Jalview.<br>\r
- Jalview takes advantage of some of the more recent user interface developments\r
- in the Java programming language. For instance Jalview is now a multi windowed\r
- application, this keeps all your Jalview windows neatly together in one main\r
- application window. </p>\r
-<p>If you were familiar with the original Jalview, here is a list of important\r
- features you should know about the current development:</p>\r
-<ul>\r
- <li>Editing sequences is no longer the default when mouse clicking the alignment.\r
- Instead, mouse clicking on the alignment will create a "selection region"\r
- which may be full sequences or groups of residues.</li>\r
- <li>To edit a sequence, the "Shift" key must be held down</li>\r
- <li>To edit groups, either the "Alt" key or the "Control"\r
- key must be held down.</li>\r
- <li>Colours maybe applied to the background, ie the whole alignment, or to selected\r
- regions. If the tickbox "Apply colour to all groups" is ticked (this\r
- is the default), then the colour will be applied to all groups.</li>\r
- <li>Use the right mouse button (apple and click on the mac) to define a selected\r
- region on the alignment as a new group. </li>\r
- <li>Conservation is automatically updated whenever the alignment is edited</li>\r
- <li>There is no "quick draw" option</li>\r
- <li>Edits can be undone! (and redone)</li>\r
-</ul>\r
-</body>\r
-</html>\r
+<html>
+<head><title>What's new ?</title></head>
+<body>
+<p><strong>What's new ?</strong> </p>
+<p>If you are reading this then you will already have seen some of the recent changes
+ made to Jalview.<br>
+ Jalview takes advantage of some of the more recent user interface developments
+ in the Java programming language. For instance Jalview is now a multi windowed
+ application, this keeps all your Jalview windows neatly together in one main
+ application window. </p>
+<p>If you were familiar with the original Jalview, here is a list of important
+ features you should know about the current development:</p>
+<ul>
+ <li>Editing sequences is no longer the default when mouse clicking the alignment.
+ Instead, mouse clicking on the alignment creates a "selection region"
+ which may be full sequences or groups of residues.</li>
+ <li>To insert or edit the gaps in one sequence in alignment, the
+ "Shift" key must be held down when dragging the mouse.</li>
+ <li>To insert or edit gaps for a group of sequences, the
+ "Alt" key (or in X windows the "Control"
+ key) must be held down.</li>
+ <li>Selecting colour schemes in the colour menu either sets just the
+ "background" colourscheme for the alignment, or - when
+ the tickbox "Apply colour to all groups" is ticked,
+ applies the scheme to the background and all groups defined on the alignment.</li>
+ <li>Use the right mouse button (apple and click on the Mac) whilst
+ the pointer is within the selection area to access the "define" region menu to
+ define a new region, give it a name, and change its colourscheme and display
+ properties.</li>
+ <li>Conservation is automatically updated whenever the alignment is edited</li>
+ <li>There is no "quick draw" option</li>
+ <li>Edits can be undone, and redone!</li>
+</ul>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff