-<html>
-<head><title>What's new ?</title></head>
-<body>
-<p><strong>What's new ?</strong> </p>
-<p>If you are reading this then you will already have seen some of the recent changes
- made to Jalview.<br>
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window. </p>
-<p>If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:</p>
-<ul>
- <li>Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment creates a "selection region"
- which may be full sequences or groups of residues.</li>
- <li>To insert or edit the gaps in one sequence in alignment, the
- "Shift" key must be held down when dragging the mouse.</li>
- <li>To insert or edit gaps for a group of sequences, the
- "Alt" key (or in X windows the "Control"
- key) must be held down.</li>
- <li>Selecting colour schemes in the colour menu either sets just the
- "background" colourscheme for the alignment, or - when
- the tickbox "Apply colour to all groups" is ticked,
- applies the scheme to the background and all groups defined on the alignment.</li>
- <li>Use the right mouse button (apple and click on the Mac) whilst
- the pointer is within the selection area to access the "define" region menu to
- define a new region, give it a name, and change its colourscheme and display
- properties.</li>
- <li>Conservation is automatically updated whenever the alignment is edited</li>
- <li>There is no "quick draw" option</li>
- <li>Edits can be undone, and redone!</li>
-</ul>
-</body>
-</html>
+<html>\r
+<head><title>What's new ?</title></head>\r
+<body>\r
+<p><strong>What's new ?</strong> </p>\r
+<p>Jalview Version 2.07 </p>\r
+<p><a href="features/seqfetch.html">Sequence Fetcher</a> has been added to quickly \r
+ retrieve sequences with known ids from several databases.</p>\r
+<p><a href="features/seqfeatures.html">Sequence Features enhanced</a> to allow \r
+ the user to display all features of a Uniprot file on the alignment and subsequently \r
+ colour, hide or show overlapping features. </p>\r
+<p><a href="io/fileformats.html">Choose to omit /start-end from sequences when \r
+ saving files.</a> This is important for saving files to be used by some programs \r
+ which cannot read the original Jalview sequence output with the appended /start-end.</p>\r
+<p><a href="features/pdbviewer.html">PDB structure viewer enhanced</a>. Mapping \r
+ between sequence and structure has been enhanced, colours on the alignment are \r
+ reflected in the structure viewer.</p>\r
+<p><a href="http://www.jalview.org/examples/applet.html">Jalview Applet can read \r
+ in feature files, PDB files be used as input to HTML form</a> See the website \r
+ to find out the new parameters available for the Applet Version of Jalview.</p>\r
+<p> </p>\r
+<p><strong>Issues Resolved</strong></p>\r
+<p>Group Editing is possible with Control and mouse click. Alt key and mouse press \r
+ does not work as this translates as the middle mouse button, which since 2.04 \r
+ is now used to scroll the alignment and change the font size. </p>\r
+<p>HTML export now writes groups and features which were previously missing.</p>\r
+<p> </p>\r
+<p>See the <a href="releases.html">Release History</a> page for details of all \r
+ new features and resolved issues. </p>\r
+</body>\r
+</html>\r
git://source.jalview.org / jalview.git / blobdiff