</head>
<body>
<p>
- <strong>What's new ?</strong>
+ <strong>What's new in Jalview 2.10 ?</strong>
</p>
<p>
Jalview 2.10 is the next major release in the Jalview 2 series. Full
details are in the <a href="releases.html#Jalview.2.10.0">Jalview
2.10 Release Notes</a>, but the highlights are below.
</p>
- <p>
- <strong>Highlights in Jalview 2.10</strong>
<ul>
<li><strong>Ensembl sequence fetcher.</strong> Annotated Genes,
transcripts and proteins can be retrieved via Jalview's new <a
client</a>. Support for import of Ensembl data allows:
<ul>
<li><strong>Sequence variant data.</strong> Jalview
- propagates variant annotation on genomic regions onto transcripts and
- protein products, complete with associated metadata such as
- clinical significance.</li>
+ propagates variant annotation on genomic regions onto
+ transcripts and protein products, complete with associated
+ metadata such as clinical significance.</li>
<li><strong>Aligned locus view.</strong> Transcripts
retrieved for a gene identifier via the Ensembl or
EnsemblGenomes sequence databases are automatically aligned to
to UniProt sequences</a>, even for structures containing
multiple copies of a sequence.</li>
<li><strong>Import structures as mmCIF</strong>. Jalview
+ now downloads data from the EMBL-EBI's PDBe site as <a
+ href="features/mmcif.html">mmCIF</a>. This allows very large
+ structures to be imported, such as the HIV virus capsid
+ assembly.</li>
<li><strong>Chimera users will need to upgrade to
1.11.1.</strong>If you use Chimera to view structures downloaded by
Jalview 2.10, you will need to make sure you are running the
latest version of <a href="features/chimera.html">Chimera</a>.</li>
- now downloads data from the EMBL-EBI's PDBe site as <a href="features/mmcif.html">mmCIF</a>.
- This allows very large structures to be imported, such as the HIV virus capsid assembly.</li>
</ul></li>
<li><strong>UniProt Free Text Search.</strong> The new search
dialog for UniProt allows you to browse and retrieve sequences
sequence. The reference sequence for alignment views can also be
saved and restored from Jalview projects.</li>
<li><strong>Ensembl and ENA 'show cross-references'
- support.</strong>The Calculations menu's 'Show cross-references' will now
- offer Ensembl as well as EMBLCDS and Uniprot when CDS/Protein
- mapping data is available for download or display.</li>
+ support.</strong>The Calculations menu's <strong>'Show
+ cross-references'</strong> will now offer Ensembl as well as EMBLCDS and
+ Uniprot when CDS/Protein mapping data is available for download or
+ display.</li>
+
</ul>
</body>
git://source.jalview.org / jalview.git / blobdiff