<?xml version="1.0"?>
<!--
- Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
-
- This file is part of Jalview.
-
- Jalview is free software: you can redistribute it and/or
- modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
-
- Jalview is distributed in the hope that it will be useful, but
- WITHOUT ANY WARRANTY; without even the implied warranty
- of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
-->
<mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">
</field>
</class>
<class name="jalview.datamodel.xdb.embl.EmblEntry">
- <map-to xml="entry"/>
<field name="accession" type="string">
<bind-xml location="accession" node="attribute"/>
</field>
+ <!-- May 2015 changed from last-updated to match xml -->
<field name="lastUpdated" type="string">
- <bind-xml location="last-updated" node="attribute"/>
+ <bind-xml location="lastUpdated" node="attribute"/>
</field>
<field name="version" type="string">
<bind-xml location="version" node="attribute"/>
</field>
-
<field name="rCreated" type="string">
<bind-xml location="releaseCreated" node="attribute"/>
</field>
<field name="desc" type="string">
<bind-xml name="description" node="element"/>
</field>
- <field name="Keywords" type="string" collection="vector">
+ <field name="keywords" type="string" collection="vector">
<bind-xml name="keyword" node="element"/>
</field>
<field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
<bind-xml name="dbreference" />
</field>
<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
- <bind-xml name="sequence"/> <!-- location="sequence" node="element"/ -->
+ <bind-xml name="sequence"/>
</field>
</class>
<class name="jalview.datamodel.xdb.embl.EmblSequence">
- <map-to xml="sequence"/>
<field name="type" type="string">
<bind-xml name="type" node="attribute" location="type"/>
</field>
</field>
</class>
<class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
- <map-to xml="feature"/>
<field name="name" type="string">
<bind-xml name="name" node="attribute"/>
</field>
</field>
</class>
<class name="jalview.datamodel.DBRefEntry" verify-constructable="false">
- <field name="accessionId" type="java.lang.String"><!-- set-method="setAccessionId" get-method="getAccessionId"> -->
+ <field name="accessionId" type="java.lang.String">
<bind-xml name="primary" node="attribute"/>
</field>
- <field name="source" type="java.lang.String"> <!--set-method="setSource" get-method="getSource"> -->
+ <field name="source" type="java.lang.String">
<bind-xml name="db" node="attribute"/>
</field>
- <field name="version" type="string"><!-- set-method="setVersion" get-method="getVersion"> -->
+ <field name="version" type="string">
<bind-xml name="secondary" node="attribute"/>
</field>
</class>
<class name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
- <map-to xml="Qualifier"/>
<field name="name">
<bind-xml name="name" node="attribute"/>
</field>
</field>
</class>
<class name="jalview.datamodel.xdb.embl.EmblFeatureLocations">
- <map-to xml="location"/>
<field name="locationType" type="string">
<bind-xml name="type" node="attribute"/>
</field>
</field>
</class>
<class name="jalview.datamodel.xdb.embl.EmblFeatureLocElement">
- <map-to xml="locationElement"/>
<field name="type" type="string">
<bind-xml name="type" node="attribute"/>
</field>
</field>
</class>
<class name="jalview.datamodel.xdb.embl.BasePosition">
- <map-to xml="basePosition"/>
<field name="type">
<bind-xml name="type" node="attribute"/>
</field>