JAL-2629 add basic parameter adjustment to hmmsearch/align

[jalview.git] / resources / lang / Messages.properties

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 570c7e0..0749a23 100644 (file)
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -1331,6 +1331,7 @@ label.select_hmm = Select HMM
 warn.no_sequence_data = No sequence data found.
 label.hmmer = HMMER
 label.trim_termini = Trim Non-Matching Termini
+label.trim_termini_desc = If true, non-matching regions on either end of the resulting alignment are removed.
 label.no_of_sequences = Sequences Returned
 label.freq_alignment = Use Alignment Background Frequencies
 label.freq_uniprot = Use Uniprot Background Frequencies
@@ -1343,4 +1344,20 @@ warn.hmmbuild_failed = hmmbuild was not found.
 warn.align_failed = hmmalign was not found.
 label.invalid_folder = Invalid Folder
 label.folder_not_exists = HMMER binaries not found. \n Please enter the path to the HMMER binaries (if installed).
-label.hmmer_installed = HMMER installed
\ No newline at end of file
+label.hmmer_installed = HMMER installed
+label.hmmer_no_sequences_found = No sequences found.
+label.number_of_results = Number of Results to Return
+label.auto_align_seqs = Automatically Align Fetched Sequences
+label.use_accessions = Return Accessions
+label.seq_e_value = Sequence E-value Cutoff
+label.seq_score = Sequence Score Threshold
+label.dom_e_value = Domain E-value Cutoff
+label.dom_score = Domain Score Threshold
+label.number_of_results_desc = The maximum number of results that hmmsearch will return.
+label.auto_align_seqs_desc = If true, all fetched sequences will be aligned to the hidden Markov model with which the search was performed.
+label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequences name.
+label.seq_e_value_desc = The E-value cutoff for returned sequences.
+label.seq_score_desc = The score threshold for returned sequences.
+label.dom_e_value_desc = The E-value cutoff for returned domains.
+label.dom_score_desc = The score threshold for returned domains.
+label.not_enough_sequences = There are not enough sequences to run {0}
\ No newline at end of file