label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n
label.sequences_updated = Sequences updated
label.dbref_search_completed = DBRef search completed
-label.show_all_chains = Show all chains
label.fetch_all_param = Fetch all {0}
label.paste_new_window = Paste To New Window
label.settings_for_param = Settings for {0}
label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window:
label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
label.do_not_display_again = Do not display this message again
-exception.url_cannot_have_miriam_id = {0} is a MIRIAM id and cannot be used as a custom url name
exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
label.filter = Filter text:
action.customfilter = Custom only
label.invalid_name = Invalid Name !
label.output_seq_details = Output Sequence Details to list all database references
label.urllinks = Links
+label.default_cache_size = Default Cache Size
+action.clear_cached_items = Clear Cached Items
label.togglehidden = Show hidden regions
label.quality_descr = Alignment Quality based on Blosum62 scores
label.conservation_descr = Conservation of total alignment less than {0}% gaps
label.show_experimental = Enable experimental features
label.show_experimental_tip = Enable any new and currently 'experimental' features (see Latest Release Notes for details)
label.warning_hidden = Warning: {0} {1} is currently hidden
-label.auto_align_seqs = Automatically Align New Sequences
-label.hmmalign = Align Sequences to HMM
-label.hmmbuild = Build HMM from Alignment
+label.hmmalign = hmmalign
+label.hmmbuild = hmmbuild
+label.hmmbuild_group = Build HMM from Selected Group
label.group_hmmbuild = Build HMM from Group
-label.hmmsearch = Search for Related Sequences
-label.change_hmmer_location = Set HMMER Installation Location
+label.hmmsearch = hmmsearch
+label.change_hmmer_location = HMMER Binaries Installation Location
warn.null_hmm = Please ensure the alignment contains a hidden Markov model.
label.ignore_below_background_frequency = Ignore Below Background Frequency
label.information_description = Information content, measured in bits
warn.no_selected_hmm = Please select a hidden Markov model sequence.
label.select_hmm = Select HMM
warn.no_sequence_data = No sequence data found.
+label.hmmer = HMMER
+label.trim_termini = Trim Non-Matching Termini
+label.trim_termini_desc = If true, non-matching regions on either end of the resulting alignment are removed.
+label.no_of_sequences = Sequences Returned
+label.freq_alignment = Use Alignment Background Frequencies
+label.freq_uniprot = Use Uniprot Background Frequencies
+label.hmmalign_label = hmmalign Options
+label.hmmsearch_label = hmmsearch Options
+label.hmmbuild_not_found = The hmmbuild binary was not found.
+label.hmmalign_not_found = The hmmalign binary was not found.
+label.hmmsearch_not_found = The hmmsearch binary was not found.
+warn.hmmbuild_failed = hmmbuild was not found.
+warn.align_failed = hmmalign was not found.
+label.invalid_folder = Invalid Folder
+label.folder_not_exists = HMMER binaries not found. \n Please enter the path to the HMMER binaries (if installed).
+label.hmmer_installed = HMMER installed
+label.hmmer_no_sequences_found = No sequences found.
+label.number_of_results = Number of Results to Return
+label.auto_align_seqs = Automatically Align Fetched Sequences
+label.use_accessions = Return Accessions
+label.seq_e_value = Sequence E-value Cutoff
+label.seq_score = Sequence Score Threshold
+label.dom_e_value = Domain E-value Cutoff
+label.dom_score = Domain Score Threshold
+label.number_of_results_desc = The maximum number of results that hmmsearch will return.
+label.auto_align_seqs_desc = If true, all fetched sequences will be aligned to the hidden Markov model with which the search was performed.
+label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequences name.
+label.seq_e_value_desc = The E-value cutoff for returned sequences.
+label.seq_score_desc = The score threshold for returned sequences.
+label.dom_e_value_desc = The E-value cutoff for returned domains.
+label.dom_score_desc = The score threshold for returned domains.
+label.not_enough_sequences = There are not enough sequences to run {0}
\ No newline at end of file
git://source.jalview.org / jalview.git / blobdiff