action.show_html_source = Show HTML Source
action.print = Print...
action.web_service = Web Service
+action.hmmer = HMMER
action.cancel_job = Cancel Job
action.start_job = Start Job
action.revert = Revert
action.by_conservation = By Conservation
action.wrap = Wrap
action.show_gaps = Show Gaps
-action.show_occupancy = Show Occupancy
action.show_hidden_markers = Show Hidden Markers
action.find = Find
action.undefine_groups = Undefine Groups
label.remove_user_defined_colour = Remove user defined colour
label.you_must_select_least_two_sequences = You must select at least 2 sequences.
label.invalid_selection = Invalid Selection
-label.principal_component_analysis_must_take_least_four_input_sequences = Principal component analysis must take\nat least 4 input sequences.
label.sequence_selection_insufficient = Sequence selection insufficient
-label.you_need_more_two_sequences_selected_build_tree = You need to have more than two sequences selected to build a tree!
+label.you_need_at_least_n_sequences = You need to select at least {0} sequences
label.not_enough_sequences = Not enough sequences
label.selected_region_to_tree_may_only_contain_residues_or_gaps = The selected region to create a tree may\nonly contain residues or gaps.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services.
label.sequences_selection_not_aligned = Sequences in selection are not aligned
label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n
label.sequences_updated = Sequences updated
label.dbref_search_completed = DBRef search completed
-label.show_all_chains = Show all chains
label.fetch_all_param = Fetch all {0}
label.paste_new_window = Paste To New Window
label.settings_for_param = Settings for {0}
status.searching_for_pdb_structures = Searching for PDB Structures
status.opening_file_for = opening file for
status.colouring_chimera = Colouring Chimera
+status.running_hmmbuild = "Building hidden Markov model"
+status.running_hmmalign = "Creating alignment with hidden Markov model"
+status.running_hmmsearch = "Searching for matching sequences"
label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
label.font_too_small = Font size is too small
label.error_loading_file_params = Error loading file {0}
label.start_jalview = Start Jalview
label.biojs_html_export = BioJS
label.scale_as_cdna = Scale protein residues to codons
+label.font_as_cdna = Use same font for cDNA and peptide
label.scale_protein_to_cdna = Scale Protein to cDNA
label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
info.select_annotation_row = Select Annotation Row
label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window:
label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
label.do_not_display_again = Do not display this message again
-exception.url_cannot_have_miriam_id = {0} is a MIRIAM id and cannot be used as a custom url name
exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
label.filter = Filter text:
action.customfilter = Custom only
label.invalid_name = Invalid Name !
label.output_seq_details = Output Sequence Details to list all database references
label.urllinks = Links
+label.default_cache_size = Default Cache Size
+action.clear_cached_items = Clear Cached Items
+label.togglehidden = Show hidden regions
+label.quality_descr = Alignment Quality based on Blosum62 scores
+label.conservation_descr = Conservation of total alignment less than {0}% gaps
+label.consensus_descr = PID
+label.complement_consensus_descr = PID for cDNA
+label.strucconsensus_descr = PID for base pairs
+label.occupancy_descr = Number of aligned positions
+label.show_experimental = Enable experimental features
+label.show_experimental_tip = Enable any new and currently 'experimental' features (see Latest Release Notes for details)
+label.warning_hidden = Warning: {0} {1} is currently hidden
+label.hmmalign = hmmalign
+label.hmmbuild = hmmbuild
+label.hmmbuild_group = Build HMM from Selected Group
+label.group_hmmbuild = Build HMM from Group
+label.hmmsearch = hmmsearch
+label.change_hmmer_location = HMMER Binaries Installation Location
+warn.null_hmm = Please ensure the alignment contains a hidden Markov model.
+label.ignore_below_background_frequency = Ignore Below Background Frequency
+label.information_description = Information content, measured in bits
+label.enter_location = Please enter the path of your HMMER binaries folder.
+label.invalid_hmmer_folder = The folder that you selected does not contain the necessary HMMER binaries.
+warn.no_selected_hmm = Please select a hidden Markov model sequence.
+label.select_hmm = Select HMM
+warn.no_sequence_data = No sequence data found.
+label.hmmer = HMMER
+label.trim_termini = Trim Non-Matching Termini
+label.trim_termini_desc = If true, non-matching regions on either end of the resulting alignment are removed.
+label.no_of_sequences = Sequences Returned
+label.freq_alignment = Use Alignment Background Frequencies
+label.freq_uniprot = Use Uniprot Background Frequencies
+label.hmmalign_label = hmmalign Options
+label.hmmsearch_label = hmmsearch Options
+label.hmmbuild_not_found = The hmmbuild binary was not found.
+label.hmmalign_not_found = The hmmalign binary was not found.
+label.hmmsearch_not_found = The hmmsearch binary was not found.
+warn.hmmbuild_failed = hmmbuild was not found.
+warn.align_failed = hmmalign was not found.
+label.invalid_folder = Invalid Folder
+label.folder_not_exists = HMMER binaries not found. \n Please enter the path to the HMMER binaries (if installed).
+label.hmmer_installed = HMMER installed
+label.hmmer_no_sequences_found = No sequences found.
+label.number_of_results = Number of Results to Return
+label.auto_align_seqs = Automatically Align Fetched Sequences
+label.use_accessions = Return Accessions
+label.seq_e_value = Sequence E-value Cutoff
+label.seq_score = Sequence Score Threshold
+label.dom_e_value = Domain E-value Cutoff
+label.dom_score = Domain Score Threshold
+label.number_of_results_desc = The maximum number of results that hmmsearch will return.
+label.auto_align_seqs_desc = If true, all fetched sequences will be aligned to the hidden Markov model with which the search was performed.
+label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequences name.
+label.seq_e_value_desc = The E-value cutoff for returned sequences.
+label.seq_score_desc = The score threshold for returned sequences.
+label.dom_e_value_desc = The E-value cutoff for returned domains.
+label.dom_score_desc = The score threshold for returned domains.
+label.not_enough_sequences = There are not enough sequences to run {0}
\ No newline at end of file
git://source.jalview.org / jalview.git / blobdiff