action.remove_right = Remove right
action.remove_empty_columns = Remove Empty Columns
action.remove_all_gaps = Remove All Gaps
-action.left_justify_alignment = Left Justify Alignment
-action.right_justify_alignment = Right Justify Alignment
+tooltip.left_justify = Left justify whole alignment or selected region
+tooltip.right_justify = Right justify whole alignment or selected region
+action.left_justify = Left Justify
+action.right_justify = Right Justify
action.boxes = Boxes
action.text = Text
action.by_pairwise_id = By Pairwise Identity
action.by_tree_order = By Tree Order
action.sort = Sort
action.calculate_tree = Calculate Tree...
-action.calculate_tree_pca = Calculate Tree or PCA...
+action.calculate_tree_pca = Calculate Tree, PCA or PaSiMap...
action.help = Help
action.by_annotation = By Annotation...
action.invert_sequence_selection = Invert Sequence Selection
label.undo_command = Undo {0}
label.redo_command = Redo {0}
label.principal_component_analysis = Principal Component Analysis
+label.pasimap = PaSiMap
label.average_distance_identity = Average Distance Using % Identity
label.neighbour_joining_identity = Neighbour Joining Using % Identity
label.choose_calculation = Choose Calculation
label.norm_consensus_logo = Normalise Consensus Logo
label.apply_all_groups = Apply to all groups
label.autocalculated_annotation = Autocalculated Annotation
-label.select_secondary_structure_preference = Secondary Structure Preference
+label.show_secondary_structure = Show Secondary Structure
label.show_first = Show first
label.show_last = Show last
label.struct_from_pdb = Process secondary structure from PDB
label.output_values = Output Values...
label.output_points = Output points...
label.output_transformed_points = Output transformed points
+label.output_alignment = Output pairwise alignments
+label.pairwise_alignment_for_params = Pairwise alignments for {0}
label.input_data = Input Data...
label.nucleotide_matrix = Nucleotide matrix
label.protein_matrix = Protein matrix
label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
label.pdb_sequence_mapping = PDB - Sequence Mapping
label.pca_details = PCA details
+label.pasimap_details = PaSiMap details
label.redundancy_threshold_selection = Redundancy threshold selection
label.user_defined_colours = User defined colours
label.jalviewLite_release = JalviewLite - Release {0}
label.maximize_window = Maximize Window
label.conservation = Conservation
label.consensus = Consensus
+label.ssConsensus = Secondary Structure Consensus
label.histogram = Histogram
label.logo = Logo
label.non_positional_features = List Non-positional Features
label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
label.pca_recalculating = Recalculating PCA
label.pca_calculating = Calculating PCA
+label.pasimap_recalculating = Recalculating PaSiMap
+label.pasimap_calculating = Calculating PaSiMap
label.select_foreground_colour = Choose foreground colour
label.select_colour_for_text = Select Colour for Text
label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
label.quality_descr = Alignment Quality based on Blosum62 scores
label.conservation_descr = Conservation of total alignment less than {0}% gaps
label.consensus_descr = PID
+label.ssconsensus_label = Secondary Structure Consensus
label.ssconsensus_descr = SS Consensus
label.complement_consensus_descr = PID for cDNA
label.strucconsensus_descr = PID for base pairs
label.edit_annotation_name_description = Edit Annotation Name/Description
label.alignment = alignment
label.pca = PCA
+label.pasimap = PaSiMap
label.create_image_of = Create {0} image of {1}
label.click_to_edit = Click to edit, right-click for menu
label.backupfiles_confirm_delete = Confirm delete