JAL-2629 can now filter by sequence e-value or bit score

[jalview.git] / resources / lang / Messages.properties

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 33395d2..3b22f2e 100644 (file)
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -133,6 +133,8 @@ action.select_highlighted_columns = Select Highlighted Columns
 tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns 
 action.deselect_all = Deselect all
 action.invert_selection = Invert selection
+action.filter_by_evalue = Filter by E-Value
+action.filter_by_score = Filter by Score
 action.using_jmol = Using Jmol
 action.link = Link
 action.group_link = Group Link
@@ -1055,6 +1057,7 @@ exception.ranml_couldnt_process_data = Couldn't process data as RNAML file ({0})
 exception.ranml_invalid_file = Invalid RNAML file ({0})
 exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0})
 exception.pfam_no_sequences_found = No sequences found (PFAM input)
+exception.hmmer_no_valid_sequences_found = No valid sequences found
 exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM'
 exception.couldnt_parse_sequence_line = Could not parse sequence line: {0}
 exception.unknown_annotation_detected = Unknown annotation detected: {0} {1}
@@ -1130,7 +1133,7 @@ status.opening_file_for = opening file for
 status.colouring_chimera = Colouring Chimera
 status.running_hmmbuild = Building Hidden Markov Model
 status.running_hmmalign = Creating alignment with Hidden Markov Model
-status.running_hmmsearch = Searching for matching sequences
+status.running_search = Searching for matching sequences
 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
 label.font_too_small = Font size is too small
 label.error_loading_file_params = Error loading file {0}
@@ -1348,8 +1351,10 @@ label.cached_structures = Cached Structures
 label.free_text_search = Free Text Search
 label.hmmalign = hmmalign
 label.use_hmm = HMM profile to use
+label.use_sequence = Sequence to use
 label.hmmbuild = hmmbuild
 label.hmmsearch = hmmsearch
+label.jackhmmer = jackhmmer
 label.installation = Installation
 label.hmmer_location = HMMER Binaries Installation Location
 label.cygwin_location = Cygwin Binaries Installation Location (Windows)
@@ -1367,6 +1372,7 @@ label.freq_alignment = Use alignment background frequencies
 label.freq_uniprot = Use Uniprot background frequencies
 label.hmmalign_options = hmmalign options
 label.hmmsearch_options = hmmsearch options
+label.jackhmmer_options = jackhmmer options
 label.executable_not_found = The ''{0}'' executable file was not found
 warn.command_failed = {0} failed
 label.invalid_folder = Invalid Folder
@@ -1401,8 +1407,6 @@ label.groups = All groups
 label.selected_group = Selected group
 label.use_info_for_height = Use Information Content as Letter Height
 action.search = Search
-||||||| merged common ancestors
-=======
 label.backupfiles_confirm_delete = Confirm delete
 label.backupfiles_confirm_delete_old_files = Delete the following older backup files? (see the Backups tab in Preferences for more options)
 label.backupfiles_confirm_save_file = Confirm save file