JAL-4390 don't output alignment to text panel and stdout when lots of sequences proce...

[jalview.git] / resources / lang / Messages.properties

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 7c68c3b..56a0476 100644 (file)
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -96,7 +96,7 @@ action.scale_right = Scale Right
 action.by_tree_order = By Tree Order
 action.sort = Sort
 action.calculate_tree = Calculate Tree...
-action.calculate_tree_pca = Calculate Tree or PCA...
+action.calculate_tree_pca = Calculate Tree, PCA or PaSiMap...
 action.help = Help
 action.by_annotation = By Annotation...
 action.invert_sequence_selection = Invert Sequence Selection
@@ -185,6 +185,7 @@ label.amend = Amend
 label.undo_command = Undo {0}
 label.redo_command = Redo {0}
 label.principal_component_analysis = Principal Component Analysis
+label.pasimap = PaSiMap
 label.average_distance_identity = Average Distance Using % Identity
 label.neighbour_joining_identity = Neighbour Joining Using % Identity
 label.choose_calculation = Choose Calculation
@@ -314,6 +315,8 @@ label.labels = Labels
 label.output_values = Output Values...
 label.output_points = Output points...
 label.output_transformed_points = Output transformed points
+label.output_alignment = Output pairwise alignments
+label.pairwise_alignment_for_params = Pairwise alignments for {0}
 label.input_data = Input Data...
 label.nucleotide_matrix = Nucleotide matrix
 label.protein_matrix = Protein matrix
@@ -449,6 +452,7 @@ label.input_cut_paste_params = Cut & Paste Input - {0}
 label.alignment_output_command = Alignment output - {0}
 label.annotations = Annotations
 label.structure_options = Structure Options
+label.structure_import_options = Structure Import Options
 label.features = Features
 label.overview_params = Overview {0}
 label.paste_newick_file = Paste Newick file
@@ -458,6 +462,7 @@ label.selection_output_command = Selection output - {0}
 label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
 label.pdb_sequence_mapping = PDB - Sequence Mapping
 label.pca_details = PCA details
+label.pasimap_details = PaSiMap details
 label.redundancy_threshold_selection = Redundancy threshold selection
 label.user_defined_colours = User defined colours
 label.jalviewLite_release = JalviewLite - Release {0}
@@ -1022,6 +1027,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
 label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
 label.pca_recalculating = Recalculating PCA
 label.pca_calculating = Calculating PCA
+label.pasimap_recalculating = Recalculating PaSiMap
+label.pasimap_calculating = Calculating PaSiMap
 label.select_foreground_colour = Choose foreground colour
 label.select_colour_for_text = Select Colour for Text
 label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
@@ -1348,6 +1355,7 @@ label.annotation_description = Annotation Description
 label.edit_annotation_name_description = Edit Annotation Name/Description
 label.alignment = alignment
 label.pca = PCA
+label.pasimap = PaSiMap
 label.create_image_of = Create {0} image of {1}
 label.click_to_edit = Click to edit, right-click for menu
 label.backupfiles_confirm_delete = Confirm delete
@@ -1448,8 +1456,17 @@ label.tftype_default = Default
 label.tftype_plddt = pLDDT
 label.optional = (optional)
 label.choose_tempfac_type = Choose Temperature Factor type
+label.interpret_tempfac_as = Interpret Temperature Factor as
 label.add_pae_matrix_file = Add PAE matrix file
 label.nothing_selected = Nothing selected
-prompt.google_analytics_title = Jalview Usage Statistics
-prompt.google_analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Google Analytics ?\n(you can enable or disable usage tracking in the preferences)
+prompt.analytics_title = Jalview Usage Statistics
+prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences.
+label.working_ellipsis = Working ... 
+action.show_groups_on_matrix = Show groups on matrix
+action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row
+action.show_tree_for_matrix = Show tree for matrix
+action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix
+action.cluster_matrix = Cluster matrix
+action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1}
+action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it