JAL-3013 resolve symlink to hmmer binaries folder

[jalview.git] / resources / lang / Messages.properties

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index c5ab140..c25cda8 100644 (file)
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -269,6 +269,7 @@ label.use_rnaview = Use RNAView for secondary structure
 label.autoadd_secstr = Add secondary structure annotation to alignment
 label.autoadd_temp = Add Temperature Factor annotation to alignment
 label.structure_viewer = Default structure viewer
+label.double_click_to_browse = Double-click to browse for file
 label.chimera_path = Path to Chimera program
 label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
 label.invalid_chimera_path = Chimera path not found or not executable
@@ -1382,6 +1383,7 @@ label.hmmer = HMMER
 label.trim_termini = Trim Non-Matching Termini
 label.trim_termini_desc = If true, non-matching regions on either end of the resulting alignment are removed.
 label.no_of_sequences = Number of sequences returned
+label.reporting_cutoff = Reporting Cut-off
 label.freq_alignment = Use alignment background frequencies
 label.freq_uniprot = Use Uniprot background frequencies
 label.hmmalign_options = hmmalign options
@@ -1392,17 +1394,17 @@ label.invalid_folder = Invalid Folder
 label.number_of_results = Number of Results to Return
 label.auto_align_seqs = Automatically Align Fetched Sequences
 label.use_accessions = Return Accessions
-label.seq_e_value = Sequence E-value Cutoff
+label.seq_evalue = Sequence E-value Cut-off
 label.seq_score = Sequence Score Threshold
-label.dom_e_value = Domain E-value Cutoff
+label.dom_evalue = Domain E-value Cut-off
 label.dom_score = Domain Score Threshold
 label.number_of_results_desc = The maximum number of hmmsearch results to display
 label.auto_align_seqs_desc = If true, all fetched sequences will be aligned to the hidden Markov model with which the search was performed
 label.use_accessions_desc = If true, the accession number of each sequence is returned, rather than that sequence's name
 label.seq_e_value_desc = The E-value cutoff for returned sequences (hmmsearch -E)
-label.seq_score_desc = The score threshold for returned sequences
-label.dom_e_value_desc = The E-value cutoff for returned domains (hmmsearch -domE)
-label.dom_score_desc = The score threshold for returned domains
+label.seq_score_desc = The score threshold for returned sequences (hmmsearch -T)
+label.dom_e_value_desc = The E-value cutoff for returned domains (hmmsearch --domE)
+label.dom_score_desc = The score threshold for returned domains (hmmsearch --domT)
 label.add_database = Add Database
 label.this_alignment = This alignment
 warn.invalid_format = This is not a valid database file format. The current supported formats are Fasta, Stockholm and Pfam.
@@ -1419,3 +1421,4 @@ label.groups_and_alignment = All groups and alignment
 label.groups = All groups
 label.selected_group = Selected group
 label.use_info_for_height = Use Information Content as Letter Height
+action.search = Search
\ No newline at end of file