action.save_image = Save Image
action.paste = Paste
action.show_html_source = Show HTML Source
-action.print = Print
+action.print = Print...
action.web_service = Web Service
action.cancel_job = Cancel Job
action.start_job = Start Job
action.quit = Quit
action.expand_views = Expand Views
action.gather_views = Gather Views
-action.page_setup = Page Setup
+action.page_setup = Page Setup...
action.reload = Reload
action.load = Load
action.open = Open
action.right_justify_alignment = Right Justify Alignment
action.boxes = Boxes
action.text = Text
-action.by_pairwise_id = by Pairwise Identity
-action.by_id = by Id
-action.by_length = by Length
-action.by_group = by Group
+action.by_pairwise_id = By Pairwise Identity
+action.by_id = By Id
+action.by_length = By Length
+action.by_group = By Group
action.unmark_as_reference = Unmark as Reference
action.set_as_reference = Set as Reference
action.remove = Remove
action.remove_redundancy = Remove Redundancy...
-action.pairwise_alignment = Pairwise Alignments...
-action.by_rna_helixes = by RNA Helices
+action.pairwise_alignment = Pairwise Alignment
+action.by_rna_helixes = By RNA Helices
action.user_defined = User Defined...
action.by_conservation = By Conservation
action.wrap = Wrap
action.sort = Sort
action.calculate_tree = Calculate Tree
action.help = Help
-action.by_annotation = by Annotation...
+action.by_annotation = By Annotation...
action.invert_sequence_selection = Invert Sequence Selection
action.invert_column_selection = Invert Column Selection
action.show = Show
action.close = Close
action.add = Add
action.save_as_default = Save as default
-action.save_as = Save as
+action.save_as = Save as...
action.save = Save
action.cancel_fetch = Cancel Fetch
action.save_omit_hidden_columns = Save / Omit Hidden Regions
label.show_sequence_features = Show Sequence Features
label.nucleotide = Nucleotide
label.protein = Protein
+label.nucleotides = Nucleotides
+label.proteins = Proteins
label.to_new_alignment = To New Alignment
label.to_this_alignment = Add To This Alignment
label.apply_colour_to_all_groups = Apply Colour To All Groups
label.documentation = Documentation
label.about = About...
label.show_sequence_limits = Show Sequence Limits
-label.feature_settings = Feature Settings...
+action.feature_settings = Feature Settings...
+label.feature_settings = Feature Settings
label.all_columns = All Columns
label.all_sequences = All Sequences
label.selected_columns = Selected Columns
label.select_das_service_from_table = Select a DAS service from the table to read a full description here.</font></html>
label.session_update = Session Update
label.new_vamsas_session = New Vamsas Session
-label.load_vamsas_session = Load Vamsas Session
-label.save_vamsas_session = Save Vamsas Session
+action.load_vamsas_session = Load Vamsas Session...
+action.save_vamsas_session = Save Vamsas Session
label.select_vamsas_session_opened_as_new_vamsas_session= Select a vamsas session to be opened as a new vamsas session.
label.open_saved_vamsas_session = Open a saved VAMSAS session
label.groovy_console = Groovy Console...
label.structure_type = Structure type
label.settings_for_type = Settings for {0}
label.view_full_application = View in Full Application
-label.load_associated_tree = Load Associated Tree ...
-label.load_features_annotations = Load Features/Annotations ...
-label.export_features = Export Features ...
-label.export_annotations = Export Annotations ...
+label.load_associated_tree = Load Associated Tree...
+label.load_features_annotations = Load Features/Annotations...
+label.export_features = Export Features...
+label.export_annotations = Export Annotations...
label.to_upper_case = To Upper Case
label.to_lower_case = To Lower Case
label.toggle_case = Toggle Case
-label.edit_name_description = Edit Name/Description ...
-label.create_sequence_feature = Create Sequence Feature ...
+label.edit_name_description = Edit Name/Description...
+label.create_sequence_feature = Create Sequence Feature...
label.edit_sequence = Edit Sequence
label.edit_sequences = Edit Sequences
label.sequence_details = Sequence Details
label.window = Window
label.preferences = Preferences
label.tools = Tools
-label.fetch_sequences = Fetch Sequence(s)
+label.fetch_sequences = Fetch Sequences
+action.fetch_sequences = Fetch Sequences...
label.stop_vamsas_session = Stop Vamsas Session
label.collect_garbage = Collect Garbage
label.show_memory_usage = Show Memory Usage
label.view_all_representative_structures = View all {0} representative structures.
label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new structure viewer with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment.
label.associate_structure_with_sequence = Associate Structure with Sequence
-label.from_file = from file
+label.from_file = From File
label.enter_pdb_id = Enter PDB Id
-label.discover_pdb_ids = Discover PDB ids
+label.discover_pdb_ids = Discover PDB IDs
label.text_colour = Text Colour
+action.set_text_colour = Text Colour...
label.structure = Structure
label.view_structure = View Structure
label.view_protein_structure = View Protein Structure
-label.show_pdbstruct_dialog = 3D Structure Data ...
+label.show_pdbstruct_dialog = 3D Structure Data...
label.view_rna_structure = VARNA 2D Structure
label.clustalx_colours = Clustalx colours
label.above_identity_percentage = Above % Identity
label.export_image = Export Image
label.vamsas_store = VAMSAS store
label.translate_cDNA = Translate as cDNA
-label.linked_view_title = Linked cDNA and protein view
+label.reverse = Reverse
+label.reverse_complement = Reverse Complement
+label.linked_view_title = Linked CDS and protein view
label.align = Align
label.extract_scores = Extract Scores
label.get_cross_refs = Get Cross-References
label.set_as_default = Set as Default
label.show_labels = Show labels
label.background_colour = Background Colour
+action.background_colour = Background Colour...
label.associate_nodes_with = Associate Nodes With
label.jalview_pca_calculation = Jalview PCA Calculation
label.link_name = Link Name
label.pdb_file = PDB file
label.colour_with_jmol = Colour with Jmol
label.colour_with_chimera = Colour with Chimera
-label.align_structures = Align structures
+label.align_structures = Align Structures
label.jmol = Jmol
label.chimera = Chimera
label.sort_alignment_by_tree = Sort Alignment By Tree
label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu
label.case_sensitive = Case Sensitive
label.lower_case_colour = Lower Case Colour
-label.index_by_host = Index by host
-label.index_by_type = Index by type
+label.index_by_host = Index by Host
+label.index_by_type = Index by Type
label.enable_jabaws_services = Enable JABAWS Services
-label.display_warnings = Display warnings
-label.move_url_up = Move URL up
-label.move_url_down = Move URL down
-label.add_sbrs_definition = Add a SBRS definition
-label.edit_sbrs_definition = Edit SBRS definition
-label.delete_sbrs_definition = Delete SBRS definition
+label.display_warnings = Display Warnings
+label.move_url_up = Move URL Up
+label.move_url_down = Move URL Down
+label.add_sbrs_definition = Add a SBRS Definition
+label.edit_sbrs_definition = Edit SBRS Definition
+label.delete_sbrs_definition = Delete SBRS Definition
label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases. Some of the ids have been\n altered, most likely the start/end residue will have been updated.\n Save your alignment to maintain the updated id.\n\n
label.sequence_names_updated = Sequence names updated
label.dbref_search_completed = DBRef search completed
label.paste_new_window = Paste To New Window
label.settings_for_param = Settings for {0}
label.view_params = View {0}
+label.aacon_calculations = AACon Calculations
+label.aacon_settings = Change AACon Settings...
+tooltip.aacon_calculations = When checked, AACon calculations are updated automatically.
+tooltip.aacon_settings = Modify settings for AACon calculations.
+label.rnalifold_calculations = RNAAliFold Prediction
+label.rnalifold_settings = Change RNAAliFold settings...
+tooltip.rnalifold_calculations = When checked, RNA secondary structure predictions will be calculated for the alignment, and updated when edits are made.
+tooltip.rnalifold_settings = Modify settings for the RNAAliFold prediction. Use this to hide or show different results of the RNA calculation, and change RNA folding parameters.
label.all_views = All Views
label.align_sequences_to_existing_alignment = Align sequences to an existing alignment
label.realign_with_params = Realign with {0}
label.graduated_color_for_params = Graduated Feature Colour for {0}
label.select_backgroud_colour = Select Background Colour
label.invalid_font = Invalid Font
-label.separate_multiple_accession_ids = Enter one or more PDB accession IDs separated by a semi-colon ";"
+label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
-label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database)
+label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire database)
label.replace_commas_semicolons = Replace commas with semi-colons
label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0}
label.blasting_for_unidentified_sequence = BLASTing for unidentified sequences
label.select_columns_containing = Select columns containing
label.select_columns_not_containing = Select columns that do not contain
+label.hide_columns_containing = Hide columns containing
+label.hide_columns_not_containing = Hide columns that do not contain
option.trim_retrieved_seqs = Trim retrieved sequences
label.trim_retrieved_sequences = When the reference sequence is longer than the sequence that you are working with, only keep the relevant subsequences.
label.use_sequence_id_1 = Use $SEQUENCE_ID$ or $SEQUENCE_ID=/<regex>/=$
label.run_with_preset = Run {0} with preset
label.view_service_doc_url = <html>View <a href="{0}">{1}</a></html>
label.submit_sequence = <html>Submit {0} {1} {2} {3} to<br/>{4}</html>
-action.by_title_param = by {0}
+action.by_title_param = By {0}
label.alignment = Alignment
label.secondary_structure_prediction = Secondary Structure Prediction
label.sequence_database_search = Sequence Database Search
label.protein_disorder = Protein Disorder
label.source_from_db_source = Sources from {0}
label.from_msname = from {0}
-label.superpose_with = Superpose with ...
+label.superpose_with = Superpose with
action.do = Do
label.scale_label_to_column = Scale Label to Column
label.add_new_row = Add New Row
error.dbrefsource_implementation_exception =DBRefSource Implementation Exception
error.implementation_error_dbinstance_must_implement_interface = Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given{0})
error.implementation_error_must_init_dbsources =Implementation error. Must initialise dbSources
-label.view_controller_toggled_marked = {0} {1} columns {2} containing features of type {3} across {4} sequence(s)
+label.view_controller_toggled_marked = {0} {1} columns containing features of type {2} across {3} sequence(s)
label.toggled = Toggled
label.marked = Marked
label.not = not
label.eps_file = EPS file
label.png_image = PNG image
status.saving_file = Saving {0}
-status.export_complete = Export complete.
+status.export_complete = {0} Export completed.
status.fetching_pdb = Fetching PDB {0}
status.refreshing_news = Refreshing news
status.importing_vamsas_session_from = Importing VAMSAS session from {0}
warn.couldnt_create_sequence_fetcher_client = Could not create the sequence fetcher client. Check error logs for details.
warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details.
warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$ or a regex $SEQUENCE_ID=/<regex>/=$
+warn.urls_not_contacted = URLs that could not be contacted
+warn.urls_no_jaba = URLs without any JABA Services
info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
label.test_server = Test Server?
info.you_want_jalview_to_find_uniprot_accessions = Do you want Jalview to find\nUniprot Accession ids for given sequence names?
label.delete_all = Delete all sequences
warn.delete_all = <html>Deleting all sequences will close the alignment window.<br>Confirm deletion or Cancel.
label.add_annotations_for = Add annotations for
-label.choose_annotations = Choose annotations
+action.choose_annotations = Choose Annotations...
+label.choose_annotations = Choose Annotations
label.find = Find
label.invalid_search = Search string invalid
error.invalid_regex = Invalid regular expression
label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked?
label.open_split_window = Open split window
label.no_mappings = No mappings found
-label.mapping_failed = No sequence mapping could be made between the alignments.<br>A mapping requires sequence names to match, and equivalent sequence lengths.
action.no = No
action.yes = Yes
label.for = for
label.mark_as_representative = Mark as representative
label.open_jabaws_web_page = Open JABAWS web page
label.opens_the_jabaws_server_homepage = Opens the JABAWS server's homepage in web browser
-label.pdb_sequence_getcher = PDB Sequence Fetcher
+label.pdb_sequence_fetcher = PDB Sequence Fetcher
label.result = result
label.results = results
label.structure_chooser = Structure Chooser
info.associate_wit_sequence = Associate with Sequence
label.search_result = Search Result
label.found_structures_summary = Found Structures Summary
-label.configure_displayed_columns = Configure Displayed Columns
+label.configure_displayed_columns = Customise Displayed Options
label.start_jalview = Start Jalview
label.biojs_html_export = BioJS
label.scale_as_cdna = Scale protein residues to codons
action.export_hidden_sequences = Export Hidden Sequences
action.export_features = Export Features
label.export_settings = Export Settings
-label.save_as_biojs_html = Save as BioJs HTML
\ No newline at end of file
+label.save_as_biojs_html = Save as BioJs HTML
+label.pdb_web-service_error = PDB Web-service Error
+label.structure_chooser_manual_association = Structure Chooser - Manual association
+label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})
+label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1})
+info.no_pdb_entry_found_for = No PDB entry found for {0}
+exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection
+exception.fts_rest_service_no_longer_available = {0} rest services no longer available!
+exception.resource_not_be_found = The requested resource could not be found
+exception.fts_server_error = There seems to be an error from the {0} server
+exception.fts_server_unreachable = Jalview is unable to reach the {0} server. \nPlease ensure that you are connected to the internet and try again.
+label.nw_mapping = Needleman & Wunsch Alignment
+label.sifts_mapping = SIFTs Mapping
+label.mapping_method = Sequence \u27f7 Structure mapping method
+status.waiting_for_user_to_select_output_file = Waiting for user to select {0} file
+status.cancelled_image_export_operation = Cancelled {0} export operation
+info.error_creating_file = Error creating {0} file
+exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File
+label.run_groovy = Run Groovy console script
+label.run_groovy_tip = Run the script in the Groovy console over this alignment
+label.couldnt_run_groovy_script = Failed to run Groovy script
+label.uniprot_sequence_fetcher = UniProt Sequence Fetcher
+action.next_page= >>
+action.prev_page= <<
+label.next_page_tooltip=Next Page
+label.prev_page_tooltip=Previous Page
+exception.bad_request=Bad request. There is a problem with your input.
+exception.service_not_available=Service not available. The server is being updated, try again later.
git://source.jalview.org / jalview.git / blobdiff