ScoreMatrix PAM250
-ARNDCQEGHILKMFPSTWYVBZX-*
#
# The PAM250 substitution matrix
# The first line declares a ScoreMatrix with the name PAM250 (shown in menus)
# Scores are not case sensitive, unless column(s) are provided for lower case characters
# Values may be integer or floating point, delimited by tab, space, comma or combinations
#
-# A R N D C Q E G H I L K M F P S T W Y V B Z X - *
+ A R N D C Q E G H I L K M F P S T W Y V B Z X - *
A 2 -2 0 0 -2 0 0 1 -1 -1 -2 -1 -1 -3 1 1 1 -6 -3 0 0 0 0 -8 -8
R -2 6 0 -1 -4 1 -1 -3 2 -2 -3 3 0 -4 0 0 -1 2 -4 -2 -1 0 -1 -8 -8
N 0 0 2 2 -4 1 1 0 2 -2 -3 1 -2 -3 0 1 0 -4 -2 -2 2 1 0 -8 -8