JAL-1541 upadated BioJs emmitter to store alignment data as json

[jalview.git] / resources / templates / BioJSTemplate.txt

diff --git a/resources/templates/BioJSTemplate.txt b/resources/templates/BioJSTemplate.txt
index 67ed26a..8314a25 100644 (file)
--- a/resources/templates/BioJSTemplate.txt
+++ b/resources/templates/BioJSTemplate.txt
@@ -11,7 +11,9 @@
 <link type=text/css rel=stylesheet href=  https://raw.githubusercontent.com/greenify/biojs-vis-msa/master/external/jquery.dropdown.css />
   
 <div id="menuDiv"></div>
+<div> This data was generated from Jalview<div>
 <div id="yourDiv">press "Run with JS"</div>
+<input type='hidden' id='seqData' name='seqData' value='#sequenceData#'/>
 </body>
 </html>
 
@@ -27,9 +29,11 @@ var opts = {};
 // set your custom properties
 // @see: https://github.com/greenify/biojs-vis-msa/tree/master/src/g 
 
-var seqOnFly = [];
-#sequenceData#
-opts.seqs = seqOnFly;
+//var seqOnFly = [];
+
+//alert(document.getElementById("seqData").value);
+
+opts.seqs = JSON.parse(document.getElementById("seqData").value); 
 
 //opts.seqs = seqs; //msa.utils.seqgen.getDummySequences(1000,300);
 opts.el = document.getElementById("yourDiv");