save structures

[jalview.git] / schemas / jalview.xsd

diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 3df2951..055710e 100755 (executable)
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>\r
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" xmlns:jalview="www.jalview.org/colours" xmlns:jv="www.jalview.org" targetNamespace="www.jalview.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
-       <xs:import namespace="www.vamsas.ac.uk/jalview/version2" schemaLocation="vamsas.xsd"/>\r
+               <xs:import namespace="www.vamsas.ac.uk/jalview/version2" schemaLocation="vamsas.xsd"/>\r
        <xs:import namespace="www.jalview.org/colours" schemaLocation="JalviewUserColours.xsd"/>\r
        <xs:complexType name="JalviewModel">\r
                <xs:sequence>\r
@@ -12,7 +12,29 @@
                                        <xs:complexType>\r
                                                <xs:sequence>\r
                                                        <xs:element name="features" type="jv:feature" minOccurs="0" maxOccurs="unbounded"/>\r
-                                                       <xs:element name="pdbids" type="jv:pdbentry" minOccurs="0" maxOccurs="unbounded"/>\r
+                                                       <xs:element name="pdbids" minOccurs="0" maxOccurs="unbounded">\r
+                                                               <xs:complexType>\r
+                                                                       <xs:complexContent>\r
+                                                                               <xs:extension base="jv:pdbentry">\r
+                                                                                       <xs:sequence>\r
+                                                                                               <xs:element name="structureState" minOccurs="0" maxOccurs="unbounded">\r
+                                                                                                       <xs:complexType>\r
+                                                                                                               <xs:simpleContent>\r
+                                                                                                                       <xs:extension base="xs:string">\r
+                                                                                                                               <xs:attribute name="visible" type="xs:boolean"/>\r
+                                                                                                                               <xs:attribute name="xpos" type="xs:int"/>\r
+                                                                                                                               <xs:attribute name="ypos" type="xs:int"/>\r
+                                                                                                                               <xs:attribute name="width" type="xs:int"/>\r
+                                                                                                                               <xs:attribute name="height" type="xs:int"/>\r
+                                                                                                                       </xs:extension>\r
+                                                                                                               </xs:simpleContent>\r
+                                                                                                       </xs:complexType>\r
+                                                                                               </xs:element>\r
+                                                                                       </xs:sequence>\r
+                                                                               </xs:extension>\r
+                                                                       </xs:complexContent>\r
+                                                               </xs:complexType>\r
+                                                       </xs:element>\r
                                                        <xs:element name="hiddenSequences" type="xs:int" minOccurs="0" maxOccurs="unbounded"/>\r
                                                </xs:sequence>\r
                                                <xs:attribute name="colour" type="xs:int" use="optional"/>\r
@@ -37,6 +59,9 @@
                                                <xs:attribute name="displayBoxes" type="xs:boolean"/>\r
                                                <xs:attribute name="displayText" type="xs:boolean"/>\r
                                                <xs:attribute name="colourText" type="xs:boolean"/>\r
+                                               <xs:attribute name="textCol1" type="xs:int"/>\r
+                                               <xs:attribute name="textCol2" type="xs:int"/>\r
+                                               <xs:attribute name="textColThreshold" type="xs:int"/>\r
                                        </xs:complexType>\r
                                </xs:element>\r
                                <xs:element name="Viewport" maxOccurs="unbounded">\r
@@ -66,6 +91,7 @@
                                                <xs:attribute name="pidThreshold" type="xs:int"/>\r
                                                <xs:attribute name="title" type="xs:string"/>\r
                                                <xs:attribute name="showFullId" type="xs:boolean"/>\r
+                                               <xs:attribute name="rightAlignIds" type="xs:boolean"/>\r
                                                <xs:attribute name="showText" type="xs:boolean"/>\r
                                                <xs:attribute name="showColourText" type="xs:boolean"/>\r
                                                <xs:attribute name="showBoxes" type="xs:boolean"/>\r
@@ -85,6 +111,9 @@
                                                <xs:attribute name="viewName" type="xs:string"/>\r
                                                <xs:attribute name="sequenceSetId" type="xs:string"/>\r
                                                <xs:attribute name="gatheredViews" type="xs:boolean"/>\r
+                                               <xs:attribute name="textCol1" type="xs:int"/>\r
+                                               <xs:attribute name="textCol2" type="xs:int"/>\r
+                                               <xs:attribute name="textColThreshold" type="xs:int"/>\r
                                        </xs:complexType>\r
                                </xs:element>\r
                                <xs:element name="UserColours" minOccurs="0" maxOccurs="unbounded">\r