<xs:sequence>\r
<xs:element name="features" type="jv:feature" minOccurs="0" maxOccurs="unbounded"/>\r
<xs:element name="pdbids" type="jv:pdbentry" minOccurs="0" maxOccurs="unbounded"/>\r
+ <xs:element name="hiddenSequences" type="xs:int" minOccurs="0" maxOccurs="unbounded"/>\r
</xs:sequence>\r
<xs:attribute name="colour" type="xs:int" use="optional"/>\r
<xs:attribute name="start" type="xs:int" use="required"/>\r
<xs:attribute name="end" type="xs:int" use="required"/>\r
<xs:attribute name="id" type="xs:int" use="required"/>\r
+ <xs:attribute name="hidden" type="xs:boolean"/>\r
</xs:complexType>\r
</xs:element>\r
<xs:element name="JGroup" minOccurs="0" maxOccurs="unbounded">\r
<xs:attribute name="threshold" type="xs:float"/>\r
</xs:complexType>\r
</xs:element>\r
+ <xs:element name="hiddenColumns" minOccurs="0" maxOccurs="unbounded">\r
+ <xs:complexType>\r
+ <xs:attribute name="start" type="xs:int"/>\r
+ <xs:attribute name="end" type="xs:int"/>\r
+ </xs:complexType>\r
+ </xs:element>\r
</xs:sequence>\r
<xs:attribute name="conservationSelected" type="xs:boolean"/>\r
<xs:attribute name="pidSelected" type="xs:boolean"/>\r
<xs:attribute name="renderGaps" type="xs:boolean"/>\r
<xs:attribute name="showSequenceFeatures" type="xs:boolean"/>\r
<xs:attribute name="showAnnotation" type="xs:boolean"/>\r
- <xs:attribute name="showConservation" type="xs:boolean"/>\r
- <xs:attribute name="showQuality" type="xs:boolean"/>\r
- <xs:attribute name="showIdentity" type="xs:boolean"/>\r
<xs:attribute name="xpos" type="xs:int"/>\r
<xs:attribute name="ypos" type="xs:int"/>\r
<xs:attribute name="width" type="xs:int"/>\r
<xs:attribute name="fontName" type="xs:string"/>\r
<xs:attribute name="fontSize" type="xs:int"/>\r
<xs:attribute name="fontStyle" type="xs:int"/>\r
+ <xs:attribute name="viewName" type="xs:string"/>\r
+ <xs:attribute name="sequenceSetId" type="xs:string"/>\r
+ <xs:attribute name="gatheredViews" type="xs:boolean"/>\r
</xs:complexType>\r
</xs:element>\r
<xs:element name="UserColours" minOccurs="0" maxOccurs="unbounded">\r
</xs:sequence>\r
</xs:complexType>\r
<xs:complexType name="feature">\r
+ <xs:sequence>\r
+ <xs:element name="otherData" minOccurs="0" maxOccurs="unbounded">\r
+ <xs:complexType>\r
+ <xs:attribute name="key" type="xs:string" use="required"/>\r
+ <xs:attribute name="value" type="xs:string" use="required"/>\r
+ </xs:complexType>\r
+ </xs:element>\r
+ </xs:sequence>\r
<xs:attribute name="begin" type="xs:int" use="required"/>\r
<xs:attribute name="end" type="xs:int" use="required"/>\r
<xs:attribute name="type" type="xs:string" use="required"/>\r
<xs:attribute name="description" type="xs:string" use="optional"/>\r
<xs:attribute name="status" type="xs:string" use="optional"/>\r
<xs:attribute name="featureGroup" type="xs:string" use="optional"/>\r
+ <xs:attribute name="score" type="xs:float" use="optional"/>\r
</xs:complexType>\r
<xs:complexType name="pdbentry">\r
<xs:sequence minOccurs="0" maxOccurs="unbounded">\r
</xs:sequence>\r
<xs:attribute name="id" type="xs:string" use="required"/>\r
<xs:attribute name="type" type="xs:string" use="optional"/>\r
+ <xs:attribute name="file" type="xs:string"/>\r
</xs:complexType>\r
</xs:schema>\r