</xs:documentation>
</xs:annotation>
</xs:attribute>
- <xs:attribute name="colourwithAlignPanel" type="xs:boolean" use="optional" default="true">
+ <xs:attribute name="colourwithAlignPanel" type="xs:boolean" use="optional" default="false">
<xs:annotation>
<xs:documentation>
Flag set if the alignment panel containing this JSeq should be included in those used to colour its associated sequences in this structureState(since Jalview 2.7).
</xs:documentation>
</xs:annotation>
</xs:attribute>
-
+ <xs:attribute name="colourByJmol" type="xs:boolean" use="optional" default="true">
+ <xs:annotation><xs:documentation>
+ Flag set if the structure display is coloured by the Jmol state, rather than by one or more linked alignment views.
+ </xs:documentation></xs:annotation></xs:attribute>
</xs:extension>
</xs:simpleContent>