viewId will appear for each instance.</xs:documentation>
</xs:annotation>
</xs:attribute>
- <xs:attribute name="linkAlignPanel" type="xs:boolean" use="optional" default="true">
+ <xs:attribute name="alignwithAlignPanel" type="xs:boolean" use="optional" default="true">
<xs:annotation>
<xs:documentation>
- Flag set if the alignment panel containing this JSeq should be explicitly linked to the Jmol view referred to/created by this structureState (since Jalview 2.7).
+ Flag set if the alignment panel containing this JSeq should be included in those used to perform a structure superposition (since Jalview 2.7).
</xs:documentation>
</xs:annotation>
</xs:attribute>
- <xs:attribute name="alignwithAlignPanel" type="xs:boolean" use="optional" default="true">
+ <xs:attribute name="colourwithAlignPanel" type="xs:boolean" use="optional" default="true">
<xs:annotation>
<xs:documentation>
- Flag set if the alignment panel containing this JSeq should be included in those used to perform a structure superposition (since Jalview 2.7).
+ Flag set if the alignment panel containing this JSeq should be included in those used to colour its associated sequences in this structureState(since Jalview 2.7).
</xs:documentation>
</xs:annotation>
</xs:attribute>