<xs:attribute name="textCol2" type="xs:int"/>
<xs:attribute name="textColThreshold" type="xs:int"/>
<xs:attribute name="showUnconserved" type="xs:boolean" use="optional"/>
-
+ <xs:attribute name="ignoreGapsinConsensus" type="xs:boolean" use="optional" default="true"/>
+ <xs:attribute name="showConsensusHistogram" type="xs:boolean" use="optional" default="true"/>
+ <xs:attribute name="showConsensusProfile" type="xs:boolean" use="optional" default="false"/>
+ <xs:attribute name="id" type="xs:string" use="optional"><xs:annotation>
+ <xs:documentation>
+ Optional sequence group ID (only needs to be unique for this alignment)
+ </xs:documentation>
+ </xs:annotation></xs:attribute>
</xs:complexType>
</xs:element>
<xs:element name="Viewport" maxOccurs="unbounded">
<xs:attribute name="rightAlignIds" type="xs:boolean"/>
<xs:attribute name="showText" type="xs:boolean"/>
<xs:attribute name="showColourText" type="xs:boolean"/>
- <xs:attribute name="showUnconserved" type="xs:boolean" use="optional"/>
+ <xs:attribute name="showUnconserved" type="xs:boolean" use="optional" default="false"/>
<xs:attribute name="showBoxes" type="xs:boolean"/>
<xs:attribute name="wrapAlignment" type="xs:boolean"/>
<xs:attribute name="renderGaps" type="xs:boolean"/>
<xs:attribute name="showSequenceFeatures" type="xs:boolean"/>
+ <xs:attribute name="showNPfeatureTooltip" type="xs:boolean" use="optional"/>
+ <xs:attribute name="showDbRefTooltip" type="xs:boolean" use="optional"/>
+ <xs:attribute name="followHighlight" type="xs:boolean" use="optional" default="true"/>
+ <xs:attribute name="followSelection" type="xs:boolean" use="optional" default="true"/>
<xs:attribute name="showAnnotation" type="xs:boolean"/>
+ <xs:attribute name="centreColumnLabels" type="xs:boolean" use="optional" default="false"/>
+ <xs:attribute name="showGroupConservation" type="xs:boolean" use="optional" default="false"/>
+ <xs:attribute name="showGroupConsensus" type="xs:boolean" use="optional" default="false"/>
+ <xs:attribute name="showConsensusHistogram" type="xs:boolean" use="optional" default="true"/>
+ <xs:attribute name="showConsensusProfile" type="xs:boolean" use="optional" default="false"/>
+ <xs:attribute name="ignoreGapsinConsensus" type="xs:boolean" use="optional" default="true"/>
+
<xs:attribute name="xpos" type="xs:int"/>
<xs:attribute name="ypos" type="xs:int"/>
<xs:attribute name="width" type="xs:int"/>
<xs:attribute name="threshstate" type="xs:int" use="optional">
<xs:annotation><xs:documentation>threshold type for graduated feature colour</xs:documentation>
</xs:annotation></xs:attribute>
+ <xs:attribute name="max" type="xs:float" use="optional"/>
+ <xs:attribute name="min" type="xs:float" use="optional"/>
+ <xs:attribute name="colourByLabel" type="xs:boolean" use="optional"/>
+ <xs:attribute name="autoScale" type="xs:boolean" use="optional"/>
</xs:complexType>
</xs:element>
<xs:element name="group" minOccurs="0" maxOccurs="unbounded">