<?xml version="1.0" encoding="UTF-8"?>\r
-<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"\r
- xmlns:vamsas="www.vamsas.ac.uk/jalview/version2"\r
- xmlns:jalview="www.jalview.org/colours"\r
- xmlns:jv="www.jalview.org" \r
- targetNamespace="www.jalview.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
- \r
- <xs:import schemaLocation="vamsas.xsd" namespace="www.vamsas.ac.uk/jalview/version2"/>\r
- <xs:import schemaLocation="JalviewUserColours.xsd" namespace="www.jalview.org/colours"/>\r
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" xmlns:jalview="www.jalview.org/colours" xmlns:jv="www.jalview.org" targetNamespace="www.jalview.org" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
+ <xs:import namespace="www.vamsas.ac.uk/jalview/version2" schemaLocation="vamsas.xsd"/>\r
+ <xs:import namespace="www.jalview.org/colours" schemaLocation="JalviewUserColours.xsd"/>\r
<xs:complexType name="JalviewModel">\r
<xs:sequence>\r
<xs:element name="creationDate" type="xs:dateTime"/>\r
<xs:element name="JSeq" maxOccurs="unbounded">\r
<xs:complexType>\r
<xs:sequence>\r
- <xs:element name="features" type="jv:feature" minOccurs="0" maxOccurs="unbounded"/>\r
- <xs:element name="pdbids" type="jv:pdbentry" minOccurs="0" maxOccurs="unbounded"/>\r
- </xs:sequence>\r
- \r
- <xs:attribute name="colour" type="xs:int" use="optional"/>\r
- <xs:attribute name="start" type="xs:int" use="required"/>\r
- <xs:attribute name="end" type="xs:int" use="required"/>\r
- <xs:attribute name="id" type="xs:int" use="required"/>\r
- </xs:complexType>\r
+ <xs:element name="features" type="jv:feature" minOccurs="0" maxOccurs="unbounded"/>\r
+ <xs:element name="pdbids" type="jv:pdbentry" minOccurs="0" maxOccurs="unbounded"/>\r
+ </xs:sequence>\r
+ <xs:attribute name="colour" type="xs:int" use="optional"/>\r
+ <xs:attribute name="start" type="xs:int" use="required"/>\r
+ <xs:attribute name="end" type="xs:int" use="required"/>\r
+ <xs:attribute name="id" type="xs:int" use="required"/>\r
+ </xs:complexType>\r
</xs:element>\r
<xs:element name="JGroup" minOccurs="0" maxOccurs="unbounded">\r
<xs:complexType>\r
- <xs:sequence minOccurs="1">\r
- <xs:element name="seq" maxOccurs="unbounded" type="xs:int"/>\r
+ <xs:sequence>\r
+ <xs:element name="seq" type="xs:int" maxOccurs="unbounded"/>\r
</xs:sequence>\r
<xs:attribute name="start" type="xs:int"/>\r
<xs:attribute name="end" type="xs:int"/>\r
</xs:element>\r
<xs:element name="Viewport" maxOccurs="unbounded">\r
<xs:complexType>\r
+ <xs:sequence>\r
+ <xs:element name="AnnotationColours" minOccurs="0">\r
+ <xs:complexType>\r
+ <xs:attribute name="aboveThreshold" type="xs:int"/>\r
+ <xs:attribute name="annotation" type="xs:string"/>\r
+ <xs:attribute name="minColour" type="xs:int"/>\r
+ <xs:attribute name="maxColour" type="xs:int"/>\r
+ <xs:attribute name="colourScheme" type="xs:string"/>\r
+ <xs:attribute name="threshold" type="xs:float"/>\r
+ </xs:complexType>\r
+ </xs:element>\r
+ </xs:sequence>\r
<xs:attribute name="conservationSelected" type="xs:boolean"/>\r
<xs:attribute name="pidSelected" type="xs:boolean"/>\r
<xs:attribute name="bgColour" type="xs:string"/>\r
</xs:element>\r
<xs:element name="UserColours" minOccurs="0" maxOccurs="unbounded">\r
<xs:complexType>\r
- <xs:sequence minOccurs="1">\r
+ <xs:sequence>\r
<xs:element name="UserColourScheme" type="jalview:JalviewUserColours"/>\r
</xs:sequence>\r
<xs:attribute name="id" type="xs:string"/>\r
</xs:element>\r
<xs:element name="tree" minOccurs="0" maxOccurs="unbounded">\r
<xs:complexType>\r
- <xs:sequence minOccurs="0" maxOccurs="1">\r
+ <xs:sequence minOccurs="0">\r
<xs:element name="title" type="xs:string"/>\r
<xs:element name="newick" type="xs:string"/>\r
</xs:sequence>\r
<xs:attribute name="currentTree" type="xs:boolean"/>\r
</xs:complexType>\r
</xs:element>\r
- \r
- <xs:element name="FeatureSettings" minOccurs="0" maxOccurs="1">\r
- <xs:complexType>\r
- <xs:sequence>\r
- <xs:element name="setting" minOccurs="0" maxOccurs="unbounded">\r
- <xs:complexType>\r
- <xs:attribute name="type" type="xs:string" use="required"/>\r
- <xs:attribute name="colour" type="xs:int" use="required"/>\r
- <xs:attribute name="display" type="xs:boolean" use="required"/>\r
- </xs:complexType>\r
- </xs:element>\r
- </xs:sequence>\r
- </xs:complexType>\r
+ <xs:element name="FeatureSettings" minOccurs="0">\r
+ <xs:complexType>\r
+ <xs:sequence>\r
+ <xs:element name="setting" minOccurs="0" maxOccurs="unbounded">\r
+ <xs:complexType>\r
+ <xs:attribute name="type" type="xs:string" use="required"/>\r
+ <xs:attribute name="colour" type="xs:int" use="required"/>\r
+ <xs:attribute name="display" type="xs:boolean" use="required"/>\r
+ </xs:complexType>\r
+ </xs:element>\r
+ </xs:sequence>\r
+ </xs:complexType>\r
</xs:element>\r
- \r
</xs:sequence>\r
</xs:sequence>\r
</xs:complexType>\r
- \r
<xs:complexType name="feature">\r
<xs:attribute name="begin" type="xs:int" use="required"/>\r
<xs:attribute name="end" type="xs:int" use="required"/>\r
<xs:attribute name="status" type="xs:string" use="optional"/>\r
<xs:attribute name="featureGroup" type="xs:string" use="optional"/>\r
</xs:complexType>\r
- \r
<xs:complexType name="pdbentry">\r
<xs:sequence minOccurs="0" maxOccurs="unbounded">\r
<xs:element name="property" minOccurs="0" maxOccurs="unbounded">\r
<xs:attribute name="id" type="xs:string" use="required"/>\r
<xs:attribute name="type" type="xs:string" use="optional"/>\r
</xs:complexType>\r
- \r
</xs:schema>\r