<?xml version="1.0" encoding="UTF-8"?>
+<!--
+ Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+
+ This program is free software; you can redistribute it and/or
+ modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation; either version 2
+ of the License, or (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+-->
+
<!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
<xs:complexType name="VAMSAS">
<xs:sequence>
<xs:element name="alcodon" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
- <xs:attribute name="pos1" type="xs:integer"/>
- <xs:attribute name="pos2" type="xs:integer"/>
- <xs:attribute name="pos3" type="xs:integer"/>
+ <xs:annotation>
+ <xs:documentation>
+ specifies a series of aligned codons from an associated DNA sequence alignment that when translated correspond to columns of a peptide alignment.
+ Element may have either all pos1,2,3 attributes specified, or none at all (indicating a gapped column with no translated peptide).
+ </xs:documentation>
+ </xs:annotation>
+ <xs:attribute name="pos1" type="xs:integer" use="optional"/>
+ <xs:attribute name="pos2" type="xs:integer" use="optional"/>
+ <xs:attribute name="pos3" type="xs:integer" use="optional"/>
</xs:complexType>
</xs:element>
<xs:element name="alcodMap" minOccurs="0" maxOccurs="unbounded">