set chains available

[jalview.git] / src / MCview / AppletPDBCanvas.java

diff --git a/src/MCview/AppletPDBCanvas.java b/src/MCview/AppletPDBCanvas.java
index 47aa94b..bfcd67a 100755 (executable)
--- a/src/MCview/AppletPDBCanvas.java
+++ b/src/MCview/AppletPDBCanvas.java
@@ -83,6 +83,7 @@ public class AppletPDBCanvas
 
   public AppletPDBCanvas(PDBEntry pdbentry,
                          SequenceI[] seq,
+                         String [] chains,
                          AlignmentPanel ap,
                          String protocol)
 
@@ -94,7 +95,7 @@ public class AppletPDBCanvas
     ssm = StructureSelectionManager.getStructureSelectionManager();
 
     try{
-      pdb = ssm.setMapping(seq, pdbentry.getFile(), protocol);
+      pdb = ssm.setMapping(seq, chains, pdbentry.getFile(), protocol);
 
       if(protocol.equals(jalview.io.AppletFormatAdapter.PASTE))
        pdbentry.setFile("INLINE"+pdb.id);