set chains available

[jalview.git] / src / MCview / AppletPDBViewer.java

diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java
index 916e920..2471f32 100755 (executable)
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/MCview/AppletPDBViewer.java
@@ -24,8 +24,7 @@ import java.awt.event.*;
 import jalview.appletgui.*;\r
 import jalview.datamodel.*;\r
 import jalview.schemes.*;\r
-import jalview.structure.StructureListener;\r
-import jalview.structure.*;\r
+\r
 \r
 public class AppletPDBViewer\r
     extends Frame implements ActionListener, ItemListener\r
@@ -34,6 +33,7 @@ public class AppletPDBViewer
 \r
   public AppletPDBViewer(PDBEntry pdbentry,\r
                          SequenceI[] seq,\r
+                         String [] chains,\r
                          AlignmentPanel ap,\r
                          String protocol)\r
   {\r
@@ -46,7 +46,7 @@ public class AppletPDBViewer
       ex.printStackTrace();\r
     }\r
 \r
-    pdbcanvas = new AppletPDBCanvas(pdbentry, seq, ap, protocol);\r
+    pdbcanvas = new AppletPDBCanvas(pdbentry, seq, chains, ap, protocol);\r
 \r
 \r
     add(pdbcanvas, BorderLayout.CENTER);\r
@@ -88,9 +88,7 @@ public class AppletPDBViewer
     else if (evt.getSource() == seqButton)\r
     {\r
       pdbcanvas.bysequence = true;\r
-      pdbcanvas.colourBySequence(pdbcanvas.ap.getSequenceRenderer(),\r
-                                 pdbcanvas.ap.av.getShowSequenceFeatures() ?\r
-                                 pdbcanvas.ap.getFeatureRenderer() : null);\r
+      pdbcanvas.colourBySequence();\r
 \r
     }\r
     else if (evt.getSource() == zappo)\r