+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package MCview;\r
\r
import java.awt.*;\r
import java.awt.event.*;\r
import jalview.datamodel.*;\r
import jalview.appletgui.*;\r
+import jalview.schemes.*;\r
import java.awt.event.ActionListener;\r
import java.awt.event.ActionEvent;\r
\r
\r
-public class AppletPDBViewer extends Frame\r
+public class AppletPDBViewer extends Frame implements ActionListener, ItemListener\r
{\r
- PDBEntry pdb;\r
- Sequence sequence;\r
AppletPDBCanvas pdbcanvas;\r
-\r
-\r
public AppletPDBViewer(String pdbtext,String type,\r
Sequence seq,\r
SeqCanvas seqcanvas)\r
{\r
- sequence = seq;\r
\r
try\r
{\r
\r
add(pdbcanvas, BorderLayout.CENTER);\r
\r
- StringBuffer title = new StringBuffer(sequence.getName() + ":");\r
+ StringBuffer title = new StringBuffer(seq.getName() + ":");\r
\r
jalview.bin.JalviewLite.addFrame(this,title.toString(),400, 400);\r
\r
pdbcanvas.setPDBFile(pdbfile);\r
}\r
catch(Exception ex){\r
+ ex.printStackTrace();\r
pdbcanvas.errorLoading = true;\r
pdbcanvas.repaint();\r
}\r
}\r
\r
+ public void actionPerformed(ActionEvent evt)\r
+ {\r
+ if(evt.getSource()==mapping)\r
+ mapping_actionPerformed();\r
+ else if(evt.getSource()==wire)\r
+ wire_actionPerformed();\r
+ else if(evt.getSource()==depth)\r
+ depth_actionPerformed();\r
+ else if(evt.getSource()==zbuffer)\r
+ zbuffer_actionPerformed();\r
+ else if(evt.getSource()==charge)\r
+ charge_actionPerformed();\r
+\r
+ else if(evt.getSource()==chain)\r
+ chain_actionPerformed();\r
+ else if(evt.getSource()==seqButton)\r
+ seqButton_actionPerformed();\r
+ else if(evt.getSource()==zappo)\r
+ pdbcanvas.setColours(new ZappoColourScheme());\r
+ else if(evt.getSource()==taylor)\r
+ pdbcanvas.setColours(new TaylorColourScheme());\r
+ else if(evt.getSource()==hydro)\r
+ pdbcanvas.setColours(new HydrophobicColourScheme());\r
+ else if(evt.getSource()==helix)\r
+ pdbcanvas.setColours(new HelixColourScheme());\r
+ else if(evt.getSource()==strand)\r
+ pdbcanvas.setColours(new StrandColourScheme());\r
+ else if(evt.getSource()==turn)\r
+ pdbcanvas.setColours(new TurnColourScheme());\r
+ else if(evt.getSource()==buried)\r
+ pdbcanvas.setColours(new BuriedColourScheme());\r
+ else if(evt.getSource()==user)\r
+ {\r
+ pdbcanvas.bysequence = false;\r
+ new jalview.appletgui.UserDefinedColours(pdbcanvas);\r
+ }\r
+ }\r
+\r
+ public void itemStateChanged(ItemEvent evt)\r
+ {\r
+ if (evt.getSource() == allchains)\r
+ allchains_itemStateChanged();\r
+ else if (evt.getSource() == wire)\r
+ wire_actionPerformed();\r
+ else if (evt.getSource() == depth)\r
+ depth_actionPerformed();\r
+ else if (evt.getSource() == zbuffer)\r
+ zbuffer_actionPerformed();\r
+ }\r
+\r
\r
private void jbInit()\r
throws Exception\r
{\r
- this.setMenuBar(jMenuBar1);\r
+ setMenuBar(jMenuBar1);\r
fileMenu.setLabel("File");\r
coloursMenu.setLabel("Colours");\r
mapping.setLabel("View Mapping");\r
- mapping.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- mapping_actionPerformed();\r
- }\r
- });\r
+ mapping.addActionListener(this);\r
wire.setLabel("Wireframe");\r
- wire.addItemListener(new ItemListener()\r
- {\r
- public void itemStateChanged(ItemEvent e)\r
- {\r
- wire_actionPerformed();\r
- }\r
- });\r
+ wire.addItemListener(this);\r
depth.setState(true);\r
depth.setLabel("Depthcue");\r
- depth.addItemListener(new ItemListener()\r
- {\r
- public void itemStateChanged(ItemEvent e)\r
- {\r
- depth_actionPerformed();\r
- }\r
- });\r
+ depth.addItemListener(this);\r
zbuffer.setState(true);\r
zbuffer.setLabel("Z Buffering");\r
- zbuffer.addItemListener(new ItemListener()\r
- {\r
- public void itemStateChanged(ItemEvent e)\r
- {\r
- zbuffer_actionPerformed();\r
- }\r
- });\r
+ zbuffer.addItemListener(this);\r
charge.setLabel("Charge & Cysteine");\r
- charge.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- charge_actionPerformed();\r
- }\r
- });\r
+ charge.addActionListener(this);\r
hydro.setLabel("Hydrophobicity");\r
- hydro.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- hydro_actionPerformed();\r
- }\r
- });\r
+ hydro.addActionListener(this);\r
chain.setLabel("By Chain");\r
- chain.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- chain_actionPerformed();\r
- }\r
- });\r
+ chain.addActionListener(this);\r
seqButton.setLabel("By Sequence");\r
- seqButton.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e){\r
- seqButton_actionPerformed();\r
- }\r
- });\r
+ seqButton.addActionListener(this);\r
allchains.setLabel("All Chains Visible");\r
- allchains.addItemListener(new ItemListener()\r
- {\r
- public void itemStateChanged(ItemEvent itemEvent)\r
- {\r
- allchains_itemStateChanged(itemEvent);\r
- }\r
- });\r
+ allchains.addItemListener(this);\r
+ viewMenu.setLabel("View");\r
+ zappo.setLabel("Zappo");\r
+ zappo.addActionListener(this);\r
+ taylor.setLabel("Taylor");\r
+ taylor.addActionListener(this);\r
+ helix.setLabel("Helix Propensity");\r
+ helix.addActionListener(this);\r
+ strand.setLabel("Strand Propensity");\r
+ strand.addActionListener(this);\r
+ turn.setLabel("Turn Propensity");\r
+ turn.addActionListener(this);\r
+ buried.setLabel("Buried Index");\r
+ buried.addActionListener(this);\r
+ user.setLabel("User Defined...");\r
+ user.addActionListener(this);\r
jMenuBar1.add(fileMenu);\r
jMenuBar1.add(coloursMenu);\r
- fileMenu.add(mapping);;\r
+ jMenuBar1.add(viewMenu);\r
+ fileMenu.add(mapping);;\r
\r
coloursMenu.add(seqButton);\r
coloursMenu.add(chain);\r
- coloursMenu.add(hydro);\r
coloursMenu.add(charge);\r
- coloursMenu.addSeparator();\r
- coloursMenu.add(wire);\r
- coloursMenu.add(depth);\r
- coloursMenu.add(zbuffer);\r
- coloursMenu.add(allchains);\r
+ coloursMenu.add(zappo);\r
+ coloursMenu.add(taylor);\r
+ coloursMenu.add(hydro);\r
+ coloursMenu.add(helix);\r
+ coloursMenu.add(strand);\r
+ coloursMenu.add(turn);\r
+ coloursMenu.add(buried);\r
+ coloursMenu.add(user);\r
+ viewMenu.add(wire);\r
+ viewMenu.add(depth);\r
+ viewMenu.add(zbuffer);\r
+ viewMenu.add(allchains);\r
allchains.setState(true);\r
}\r
\r
MenuItem seqButton = new MenuItem();\r
\r
CheckboxMenuItem allchains = new CheckboxMenuItem();\r
+ Menu viewMenu = new Menu();\r
+ MenuItem turn = new MenuItem();\r
+ MenuItem strand = new MenuItem();\r
+ MenuItem helix = new MenuItem();\r
+ MenuItem taylor = new MenuItem();\r
+ MenuItem zappo = new MenuItem();\r
+ MenuItem buried = new MenuItem();\r
+ MenuItem user = new MenuItem();\r
\r
public void charge_actionPerformed()\r
{\r
- clearButtonGroup();\r
+ pdbcanvas.bysequence = false;\r
pdbcanvas.pdb.setChargeColours();\r
pdbcanvas.redrawneeded=true;\r
pdbcanvas.repaint();\r
}\r
\r
- public void hydro_actionPerformed()\r
- {\r
- clearButtonGroup();\r
- pdbcanvas.pdb.setHydrophobicityColours();\r
- pdbcanvas.redrawneeded=true;\r
- pdbcanvas.repaint();\r
- }\r
-\r
public void chain_actionPerformed()\r
{\r
- clearButtonGroup();\r
- pdbcanvas.pdb.setChainColours();\r
+ pdbcanvas.bysequence = false;\r
+ pdbcanvas.pdb.setChainColours();\r
pdbcanvas.redrawneeded=true;\r
pdbcanvas.repaint();\r
}\r
\r
public void seqButton_actionPerformed()\r
{\r
- clearButtonGroup();\r
pdbcanvas.bysequence = true;\r
pdbcanvas.updateSeqColours();\r
pdbcanvas.repaint();\r
}\r
\r
- void clearButtonGroup()\r
- {\r
- pdbcanvas.bysequence = false;\r
- pdbcanvas.bymolecule = false;\r
- }\r
\r
public void mapping_actionPerformed()\r
{\r
cap.setText(pdbcanvas.mappingDetails.toString());\r
}\r
\r
- public void allchains_itemStateChanged(ItemEvent itemEvent)\r
+ public void allchains_itemStateChanged()\r
{\r
pdbcanvas.setAllchainsVisible(allchains.getState());\r
}\r
+\r
}\r
git://source.jalview.org / jalview.git / blobdiff