\r
import java.awt.*;\r
\r
-import java.util.*;\r
-\r
\r
public class Atom {\r
- double x;\r
- double y;\r
- double z;\r
+ float x;\r
+ float y;\r
+ float z;\r
int number;\r
String name;\r
String resName;\r
int type;\r
Color color;\r
String chain;\r
+ int alignmentMapping=-1;\r
\r
- public Atom(StringTokenizer str) {\r
- this.number = (new Integer(str.nextToken())).intValue();\r
- this.name = str.nextToken();\r
- this.resName = str.nextToken();\r
+ public boolean isSelected = false;\r
\r
- String tmpstr = new String();\r
+ public Atom(String str)\r
+ {\r
+ name = str.substring(12,15).trim();\r
\r
- try {\r
- tmpstr = str.nextToken();\r
+ resName = str.substring(17,20);\r
\r
- this.resNumber = (new Integer(tmpstr).intValue());\r
- this.chain = "A";\r
- this.color = Color.green;\r
- } catch (NumberFormatException e) {\r
- this.chain = tmpstr;\r
+ chain = str.substring(21,22);\r
\r
- if (tmpstr.equals("A")) {\r
- this.color = new Color((float) Math.random(),\r
- (float) Math.random(), (float) Math.random());\r
- } else {\r
- this.color = Color.red;\r
- }\r
+ resNumber = Integer.parseInt(str.substring(22,26).trim());\r
\r
- this.resNumber = (new Integer(str.nextToken()).intValue());\r
- }\r
+ this.x = (float) (new Float(str.substring(30,38).trim()).floatValue());\r
+ this.y = (float) (new Float(str.substring(38,46).trim()).floatValue());\r
+ this.z = (float) (new Float(str.substring(47,55).trim()).floatValue());\r
\r
- this.x = (double) (new Double(str.nextToken()).floatValue());\r
- this.y = (double) (new Double(str.nextToken()).floatValue());\r
- this.z = (double) (new Double(str.nextToken()).floatValue());\r
}\r
\r
public void setColor(Color col) {\r