* along with this program; if not, write to the Free Software\r
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
*/\r
-\r
package MCview;\r
-import java.util.*;\r
-import java.awt.*;\r
\r
-public class Atom {\r
- double x;\r
- double y;\r
- double z;\r
- int number;\r
- String name;\r
- String resName;\r
- int resNumber;\r
- int type;\r
- Color color;\r
- String chain;\r
+import java.awt.*;\r
\r
- public Atom(StringTokenizer str) {\r
- this.number = (new Integer(str.nextToken())).intValue();\r
- this.name = str.nextToken();\r
- this.resName = str.nextToken();\r
\r
- String tmpstr = new String();\r
+public class Atom {\r
+ float x;\r
+ float y;\r
+ float z;\r
+ int number;\r
+ String name;\r
+ String resName;\r
+ int resNumber;\r
+ int type;\r
+ Color color = Color.lightGray;\r
+ String chain;\r
+ int alignmentMapping=-1;\r
\r
- try {\r
- tmpstr = str.nextToken();\r
+ public boolean isSelected = false;\r
\r
- this.resNumber = (new Integer(tmpstr).intValue());\r
- this.chain = "A";\r
- this.color = Color.green;\r
+ public Atom(String str)\r
+ {\r
+ name = str.substring(12,15).trim();\r
\r
- } catch(NumberFormatException e) {\r
- this.chain = tmpstr;\r
+ resName = str.substring(17,20);\r
\r
- if (tmpstr.equals("A")) {\r
- this.color = new Color((float)Math.random(),(float)Math.random(),(float)Math.random());\r
- } else {\r
- this.color = Color.red;\r
- }\r
- this.resNumber = (new Integer(str.nextToken()).intValue());\r
- }\r
+ chain = str.substring(21,22);\r
\r
- this.x = (double)(new Double(str.nextToken()).floatValue());\r
- this.y = (double)(new Double(str.nextToken()).floatValue());\r
- this.z = (double)(new Double(str.nextToken()).floatValue());\r
+ resNumber = Integer.parseInt(str.substring(22,26).trim());\r
\r
- }\r
+ this.x = (float) (new Float(str.substring(30,38).trim()).floatValue());\r
+ this.y = (float) (new Float(str.substring(38,46).trim()).floatValue());\r
+ this.z = (float) (new Float(str.substring(47,55).trim()).floatValue());\r
\r
- public void setColor(Color col) {\r
- this.color = col;\r
- }\r
+ }\r
\r
+ // public void setColor(Color col) {\r
+ // this.color = col;\r
+ // }\r
}\r