JAL-3700 mapped sequence group includes short (or all gapped) sequences

[jalview.git] / src / MCview / Atom.java

diff --git a/src/MCview/Atom.java b/src/MCview/Atom.java
index 03934ec..a2ce2ae 100755 (executable)
--- a/src/MCview/Atom.java
+++ b/src/MCview/Atom.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -83,14 +83,14 @@ public class Atom
     resNumber = Integer.parseInt(str.substring(22, 26).trim());
     resNumIns = str.substring(22, 27).trim();
     insCode = str.substring(26, 27).charAt(0);
-    this.x = (new Float(str.substring(30, 38).trim()).floatValue());
-    this.y = (new Float(str.substring(38, 46).trim()).floatValue());
-    this.z = (new Float(str.substring(47, 55).trim()).floatValue());
+    this.x = (Float.valueOf(str.substring(30, 38).trim()).floatValue());
+    this.y = (Float.valueOf(str.substring(38, 46).trim()).floatValue());
+    this.z = (Float.valueOf(str.substring(47, 55).trim()).floatValue());
     // optional entries - see JAL-730
     String tm = str.substring(54, 60).trim();
     if (tm.length() > 0)
     {
-      occupancy = (new Float(tm)).floatValue();
+      occupancy = (Float.valueOf(tm)).floatValue();
     }
     else
     {
@@ -100,7 +100,7 @@ public class Atom
     tm = str.substring(60, 66).trim();
     if (tm.length() > 0)
     {
-      tfactor = (new Float(tm).floatValue());
+      tfactor = (Float.valueOf(tm).floatValue());
     }
     else
     {