quickfix for applet when opening relative URLs from feature file : https://mantis...

[jalview.git] / src / MCview / Atom.java

diff --git a/src/MCview/Atom.java b/src/MCview/Atom.java
index e88c34a..e69e1ce 100755 (executable)
--- a/src/MCview/Atom.java
+++ b/src/MCview/Atom.java
@@ -23,21 +23,37 @@ import java.awt.*;
 public class Atom
 {
   public float x;
+
   public float y;
+
   public float z;
+
   public int number;
+
   public String name;
+
   public String resName;
+
   public int resNumber;
+
   public char insCode = ' ';
+
   public String resNumIns = null;
+
   public int type;
+
   Color color = Color.lightGray;
+
   public String chain;
+
   public int alignmentMapping = -1;
+
   public int atomIndex;
-  public float occupancy=0;
-  public float tfactor=0;
+
+  public float occupancy = 0;
+
+  public float tfactor = 0;
+
   public boolean isSelected = false;
 
   public Atom(String str)
@@ -56,8 +72,9 @@ public class Atom
     this.x = (float) (new Float(str.substring(30, 38).trim()).floatValue());
     this.y = (float) (new Float(str.substring(38, 46).trim()).floatValue());
     this.z = (float) (new Float(str.substring(47, 55).trim()).floatValue());
-    occupancy = (float) (new Float(str.substring(54,60).trim()).floatValue());
-    tfactor = (float) (new Float(str.substring(60,66).trim()).floatValue());
+    occupancy = (float) (new Float(str.substring(54, 60).trim())
+            .floatValue());
+    tfactor = (float) (new Float(str.substring(60, 66).trim()).floatValue());
   }
 
   public Atom(float x, float y, float z)
@@ -66,7 +83,7 @@ public class Atom
     this.y = y;
     this.z = z;
   }
-  //  public void setColor(Color col) {
-  //      this.color = col;
-  //  }
+  // public void setColor(Color col) {
+  // this.color = col;
+  // }
 }