quickfix for applet when opening relative URLs from feature file : https://mantis...

[jalview.git] / src / MCview / Bond.java

diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java
index 8a67036..cc5e67c 100755 (executable)
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -23,10 +23,15 @@ import java.awt.*;
 public class Bond
 {
   float[] start;
+
   float[] end;
+
   Color startCol = Color.lightGray;
+
   Color endCol = Color.lightGray;
+
   public Atom at1;
+
   public Atom at2;
 
   public Bond(float[] start, float[] end, Atom at1, Atom at2)
@@ -39,32 +44,27 @@ public class Bond
     this.at2 = at2;
   }
 
-  /*  public Bond(Bond bond) {
-        this.start = new float[3];
-
-        this.start[0] = bond.start[0];
-        this.start[1] = bond.start[1];
-        this.start[2] = bond.start[2];
-
-        this.end = new float[3];
-
-        this.end[0] = bond.end[0];
-        this.end[1] = bond.end[1];
-        this.end[2] = bond.end[2];
-
-        this.startCol = bond.startCol;
-        this.endCol = bond.endCol;
-    }
-
-    public float length() {
-        float len = ((end[0] - start[0]) * (end[0] - start[0])) +
-            ((end[1] - start[1]) * (end[1] - start[1])) +
-            ((end[2] - start[2]) * (end[2] - start[2]));
-
-        len = (float) (Math.sqrt(len));
-
-        return len;
-    }*/
+  /*
+   * public Bond(Bond bond) { this.start = new float[3];
+   * 
+   * this.start[0] = bond.start[0]; this.start[1] = bond.start[1]; this.start[2] =
+   * bond.start[2];
+   * 
+   * this.end = new float[3];
+   * 
+   * this.end[0] = bond.end[0]; this.end[1] = bond.end[1]; this.end[2] =
+   * bond.end[2];
+   * 
+   * this.startCol = bond.startCol; this.endCol = bond.endCol; }
+   * 
+   * public float length() { float len = ((end[0] - start[0]) * (end[0] -
+   * start[0])) + ((end[1] - start[1]) * (end[1] - start[1])) + ((end[2] -
+   * start[2]) * (end[2] - start[2]));
+   * 
+   * len = (float) (Math.sqrt(len));
+   * 
+   * return len; }
+   */
 
   public void translate(float x, float y, float z)
   {