reload, just close this frame and open a new one

[jalview.git] / src / MCview / Bond.java

diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java
index 17f66bb..fd36446 100755 (executable)
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -1,6 +1,6 @@
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
 *\r
 * This program is free software; you can redistribute it and/or\r
 * modify it under the terms of the GNU General Public License\r
@@ -24,12 +24,12 @@ import java.awt.*;
 public class Bond {\r
     float[] start;\r
     float[] end;\r
-    Color startCol;\r
-    Color endCol;\r
-    public myAtom at1;\r
-    public myAtom at2;\r
+    Color startCol = Color.lightGray;\r
+    Color endCol= Color.lightGray;\r
+    public Atom at1;\r
+    public Atom at2;\r
 \r
-    public Bond(float[] start, float[] end, myAtom at1, myAtom at2) {\r
+    public Bond(float[] start, float[] end, Atom at1, Atom at2) {\r
         this.start = start;\r
         this.end = end;\r
         this.startCol = at1.color;\r
@@ -38,7 +38,7 @@ public class Bond {
         this.at2 = at2;\r
     }\r
 \r
-    public Bond(Bond bond) {\r
+  /*  public Bond(Bond bond) {\r
         this.start = new float[3];\r
 \r
         this.start[0] = bond.start[0];\r
@@ -55,12 +55,6 @@ public class Bond {
         this.endCol = bond.endCol;\r
     }\r
 \r
-    public void print() {\r
-        System.out.println("Start " + start[0] + " " + start[1] + " " +\r
-            start[2]);\r
-        System.out.println("End   " + end[0] + " " + end[1] + " " + end[2]);\r
-    }\r
-\r
     public float length() {\r
         float len = ((end[0] - start[0]) * (end[0] - start[0])) +\r
             ((end[1] - start[1]) * (end[1] - start[1])) +\r
@@ -69,7 +63,7 @@ public class Bond {
         len = (float) (Math.sqrt(len));\r
 \r
         return len;\r
-    }\r
+    }*/\r
 \r
     public void translate(float x, float y, float z) {\r
         start[0] = (start[0] + x);\r