return tmp;
}
- void makeExactMapping(AlignSeq as, Sequence s1)
+ public void makeExactMapping(AlignSeq as, SequenceI s1)
{
int pdbpos = as.getSeq2Start() - 2;
int alignpos = s1.getStart() + as.getSeq1Start() - 3;
count++;
}
- if (id.length() < 1 || id.equals(" "))
+ if (id.length() < 1)
{
- id = "_";
+ id = " ";
}
sequence = new Sequence(id, seq.toString(), offset, resNumber - 1); // Note: resNumber-offset ~= seq.size()