JAL-1517 source formatting

[jalview.git] / src / MCview / PDBViewer.java

diff --git a/src/MCview/PDBViewer.java b/src/MCview/PDBViewer.java
index dc53855..eb214ac 100755 (executable)
--- a/src/MCview/PDBViewer.java
+++ b/src/MCview/PDBViewer.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package MCview;
@@ -52,7 +54,6 @@ public class PDBViewer extends JInternalFrame implements Runnable
 
   public PDBViewer(PDBEntry pdbentry, SequenceI[] seq, String[] chains,
           AlignmentPanel ap, String protocol)
-
   {
     this.pdbentry = pdbentry;
     this.seq = seq;
@@ -294,7 +295,8 @@ public class PDBViewer extends JInternalFrame implements Runnable
       }
     });
     viewMenu.setText(MessageManager.getString("action.view"));
-    background.setText(MessageManager.getString("label.background_colour") + "...");
+    background.setText(MessageManager.getString("label.background_colour")
+            + "...");
     background.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -364,8 +366,10 @@ public class PDBViewer extends JInternalFrame implements Runnable
 
               int option = JOptionPane.showInternalConfirmDialog(
                       jalview.gui.Desktop.desktop,
-                      MessageManager.getString("label.remove_from_default_list"),
-                      MessageManager.getString("label.remove_user_defined_colour"),
+                      MessageManager
+                              .getString("label.remove_from_default_list"),
+                      MessageManager
+                              .getString("label.remove_user_defined_colour"),
                       JOptionPane.YES_NO_OPTION);
               if (option == JOptionPane.YES_OPTION)
               {
@@ -566,7 +570,9 @@ public class PDBViewer extends JInternalFrame implements Runnable
     try
     {
       cap.setText(pdbcanvas.mappingDetails.toString());
-      Desktop.addInternalFrame(cap, MessageManager.getString("label.pdb_sequence_mapping"), 550, 600);
+      Desktop.addInternalFrame(cap,
+              MessageManager.getString("label.pdb_sequence_mapping"), 550,
+              600);
     } catch (OutOfMemoryError oom)
     {
       new OOMWarning("Opening sequence to structure mapping report", oom);
@@ -629,7 +635,8 @@ public class PDBViewer extends JInternalFrame implements Runnable
 
   public void user_actionPerformed(ActionEvent e)
   {
-    if (e.getActionCommand().equals(MessageManager.getString("action.user_defined")))
+    if (e.getActionCommand().equals(
+            MessageManager.getString("action.user_defined")))
     {
       // new UserDefinedColours(pdbcanvas, null);
     }
@@ -647,7 +654,8 @@ public class PDBViewer extends JInternalFrame implements Runnable
   public void background_actionPerformed(ActionEvent e)
   {
     java.awt.Color col = JColorChooser.showDialog(this,
-            MessageManager.getString("label.select_backgroud_colour"), pdbcanvas.backgroundColour);
+            MessageManager.getString("label.select_backgroud_colour"),
+            pdbcanvas.backgroundColour);
 
     if (col != null)
     {