/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
// TODO set the filename sensibly - try using data source name.
id = safeName(getDataName());
- try
- {
chains = new Vector();
PDBChain tmpchain;
- String line;
+ String line=null;
boolean modelFlag = false;
boolean terFlag = false;
String lastID = "";
int index = 0;
String atomnam = null;
+ try
+ {
while ((line = nextLine()) != null)
{
if (line.indexOf("HEADER") == 0)
System.out.println("OUT OF MEMORY LOADING PDB FILE");
throw new IOException("Out of memory loading PDB File");
}
+ catch (NumberFormatException ex)
+ {
+ if (line!=null) {
+ System.err.println("Couldn't read number from line:");
+ System.err.println(line);
+ }
+ }
}
/**